GH733308

Overview
NameGH733308
Unique NameGH733308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:404..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.573e-32
Identity = 72/88 (81.82%), Postives = 73/88 (82.95%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct: 1004 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1091          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.967e-31
Identity = 70/87 (80.46%), Postives = 71/87 (81.61%), Query Frame = -3
Query:   16 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 276
            PLR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  975 PLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1061          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.967e-31
Identity = 70/88 (79.55%), Postives = 72/88 (81.82%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            KPLRDALVGLPGVNGLS EQRKRLTIAVELVANPSIIFMDEPTSGLD              V+TGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct: 1008 KPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1095          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.967e-31
Identity = 70/87 (80.46%), Postives = 71/87 (81.61%), Query Frame = -3
Query:   16 PLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 276
            PLR ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  976 PLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1062          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.061e-31
Identity = 70/88 (79.55%), Postives = 72/88 (81.82%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              V+TGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  997 KSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1084          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.061e-31
Identity = 70/88 (79.55%), Postives = 72/88 (81.82%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            K LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              V+TGRTVVCTIHQPSIDIFEAFDE+ L
Sbjct:  997 KSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFL 1084          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.610e-31
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            KPLR+++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFE+FDE+LL
Sbjct:  990 KPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLL 1077          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.610e-31
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = -3
Query:   16 KPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 279
            KPLR+++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFE+FDE+LL
Sbjct:  989 KPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLL 1076          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.127e-30
Identity = 69/86 (80.23%), Postives = 71/86 (82.56%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            LRDA+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              VDTGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct:  979 LRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1064          
BLAST of GH733308 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.923e-30
Identity = 68/86 (79.07%), Postives = 72/86 (83.72%), Query Frame = -3
Query:   16 LRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXXXXXXXXXVDTGRTVVCTIHQPSIDIFEAFDEVLL 273
            L+DA+VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD              V+TGRTVVCTIHQPSIDIFEAFDE+LL
Sbjct: 1047 LKDAIVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELLL 1132          
The following BLAST results are available for this feature:
BLAST of GH733308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PDR2_ORYSJ1.573e-3281.82Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR1_TOBAC2.967e-3180.46Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_ORYSJ2.967e-3179.55Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR1_NICPL2.967e-3180.46Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR3_ORYSJ5.061e-3179.55Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI5.061e-3179.55Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
AB39G_ARATH6.610e-3177.27ABC transporter G family member 39 OS=Arabidopsis ... [more]
AB34G_ARATH6.610e-3177.27ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB35G_ARATH1.127e-3080.23ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR15_ORYSJ1.923e-3079.07Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionU_108 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733308 ID=GH733308; Name=GH733308; organism=Citrus clementina; type=EST; length=293bp
GACTGCGTACCAATTCAGCAATACCTCATCAAATGCTTCAAAAATGTCTA
TGCTTGGCTGATGAATTGTGCACACAACCGTTCTCCCTGTATCCACTGTA
TTTCTAACCGTACGCACGACAATAGCAGCTGCTCTAGCATCAAGGCCAGA
TGTTGGCTCGTCCATGAAGATGATTGAAGGGTTAGCAACCAATTCTACAG
CAATTGTCAATCTCTTCCTTTGCTCTGTTGAAAGACCATTTACTCCTGGA
AGGCCAACCAAAGCATCCCTCAATGGTTTACTCAGGACTCATC
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