GH733320

Overview
NameGH733320
Unique NameGH733320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length261
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5686 contig Ccv1_Contig5686:827..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GH733320 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.803e-28
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 2 
Query:    2 WMFPLEEGAFAKHGERRDRLTRAIMEEHTLARQKSGGTKQHFVDALLTLQEKYDLSEDTIIGLLW 196
            WMFPLEEGAFAKHG RRDRLTRAIM EHT AR+KSGG KQHFVDALLTLQ+KYDLSEDTIIGLLW
Sbjct:  231 WMFPLEEGAFAKHGARRDRLTRAIMAEHTEARKKSGGAKQHFVDALLTLQDKYDLSEDTIIGLLW 295
[Close]
BLAST of GH733320 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.687e-26
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 2 
Query:    2 WMFPLEEGAFAKHGERRDRLTRAIMEEHTLARQKSGGTKQHFVDALLTLQEKYDLSEDTIIGLLW 196
            WMFP +E AFA+HG RRDRLTRAIMEEHTLARQKS G KQHFVDALLTL+++YDLSEDTIIGLLW
Sbjct:  230 WMFPADEKAFAEHGARRDRLTRAIMEEHTLARQKSSGAKQHFVDALLTLKDQYDLSEDTIIGLLW 294
[Close]
BLAST of GH733320 vs. ExPASy Swiss-Prot
Match: C98A1_SORBI (Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.281e-17
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:    2 WMFPLEEGAFAKHGERRDRLTRAIMEEHTLARQKSGGTKQHFVDALLTLQEKYDLSEDTIIGLLW 196
            W+ PL E  +  H ERRDRLT  I+EEH  + ++SG  KQHFVDAL TL+++YDLSEDT+IGLLW
Sbjct:  234 WLCPLNEELYKTHNERRDRLTMKIIEEHAKSLKESGA-KQHFVDALFTLKQQYDLSEDTVIGLLW 297
The following BLAST results are available for this feature:
BLAST of GH733320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
C98A2_SOYBN1.803e-2890.77Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C98A3_ARATH1.687e-2684.62Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C98A1_SORBI9.281e-1761.54Cytochrome P450 98A1 OS=Sorghum bicolor GN=CYP98A1... [more]
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Properties
Property NameValue
Genbank descriptionU_120 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733320 ID=GH733320; Name=GH733320; organism=Citrus clementina; type=EST; length=261bp
GTGGATGTTCCCATTAGAGGAAGGGGCATTTGCCAAGCACGGYGAACGCC
GAGACCGTCTTACTCGAGCTATCATGGAAGAGCACACACTTGCTCGCCAG
AAGAGCGGTGGTACCAAGCAACACTTTGTTGATGCTTTGCTTACACTGCA
AGAAAAATATGACCTAAGTGAAGACACTATCATTGGACTCCTCTGGGTAA
CTGTCTAAATCATTTTATTCTCTCACTGTCCACTAGTTAGTCAACTTACT
CAGGACTCATC
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