BG733610 | Citrus Genome Database

Overview


Name	BG733610
Unique Name	BG733610
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	154

Libraries


Library Name	Type
Citrus sinensis flavedo cells	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_WHEAT (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum GN=ATPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa GN=ATPA PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

[Close]

BLAST of BG733610 vs. ExPASy Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 2

Query:    2 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 154
            EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI
Sbjct:  132 EVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAI 182

The following BLAST results are available for this feature:

BLAST of BG733610 vs. ExPASy Swiss-Prot

BLAST of BG733610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPAM_WHEAT	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Triti...	[more]
ATPAM_SOYBN	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Glyci...	[more]
ATPAM_PHAVU	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Phase...	[more]
ATPAM_PEA	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Pisum...	[more]
ATPAM_ORYSJ	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_ORYSI	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_ORYSA	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_NICPL	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Nicot...	[more]
ATPAM_MAIZE	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Zea m...	[more]
ATPAM_HELAN	1.248e-21	100.00	ATP synthase subunit alpha, mitochondrial OS=Helia...	[more]

Pages

Properties


Property Name	Value
Genbank description	Cs-24b Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-24b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BG733610 ID=BG733610; Name=BG733610; organism=Citrus sinensis; type=EST; length=154bp
CGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAGCCCA
TGCAAACGGGCTTAAAAGCGGTAGATAGTCTCGTTCCTATAGGCCGTGGT
CAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACTGCTATTGC
TATC