BQ622929 | Citrus Genome Database

Overview


Name	BQ622929
Unique Name	BQ622929
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	486

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1721	contig	Csv1_Contig1721:317..801.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.234e-28
Identity = 47/54 (87.04%), Postives = 52/54 (96.30%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG+VDQS+QSFLDD+QIGEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:   94 GSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147

HSP 2 Score: 41.5874 bits (96), Expect = 7.234e-28
Identity = 17/20 (85.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAG+DLPYSCRAG+
Sbjct:   76 VLDAAEEAGIDLPYSCRAGS 95

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.644e-27
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG VDQS++SFLDDDQI EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95

HSP 2 Score: 41.5874 bits (96), Expect = 1.644e-27
Identity = 17/20 (85.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAG+DLPYSCRAG+
Sbjct:   24 VLDAAEEAGIDLPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.786e-27
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG+VDQS+QSFLDDDQI EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:   42 GSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95

HSP 2 Score: 41.5874 bits (96), Expect = 2.786e-27
Identity = 17/20 (85.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAG+DLPYSCRAG+
Sbjct:   24 VLDAAEEAGIDLPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.042e-26
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKVVSGTVDQS+QSFLDDDQI  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   45 GACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98

HSP 2 Score: 41.2022 bits (95), Expect = 1.042e-26
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   27 ILDAAEEQGIDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.042e-26
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKVVSGTVDQS+QSFLDDDQI  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   45 GACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98

HSP 2 Score: 41.2022 bits (95), Expect = 1.042e-26
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   27 ILDAAEEQGIDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.075e-26
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+V+GT+DQS+QSFLDDDQ+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:   44 GACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97

HSP 2 Score: 43.8986 bits (102), Expect = 5.075e-26
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   26 ILDAAEEAGLDLPYSCRAGA 45

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.607e-26
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+ SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEEEL
Sbjct:   45 GACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98

HSP 2 Score: 43.8986 bits (102), Expect = 6.607e-26
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   27 ILDAAEEAGLDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.897e-25
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD  IETHKEEEL
Sbjct:   45 GACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98

HSP 2 Score: 43.1282 bits (100), Expect = 1.897e-25
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG+DLPYSCRAGA
Sbjct:   27 ILDAAEEAGIDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.117e-25
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:   94 GSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147

HSP 2 Score: 42.3578 bits (98), Expect = 3.117e-25
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAGLDLPYSCRAG+
Sbjct:   76 VLDAAEEAGLDLPYSCRAGS 95

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.449e-25
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 222
            G CSSC GKV +GTVDQ +QSFLDDDQI  GFVLTC AYP  DVTIETHKEE++A
Sbjct:   42 GSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96

HSP 2 Score: 42.3578 bits (98), Expect = 5.449e-25
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAGLDLPYSCRAG+
Sbjct:   24 VLDAAEEAGLDLPYSCRAGS 43

The following BLAST results are available for this feature:

BLAST of BQ622929 vs. ExPASy Swiss-Prot

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
FER2_ARATH	7.234e-28	87.04	Ferredoxin-2, chloroplastic OS=Arabidopsis thalian...	[more]
FER_BRANA	1.644e-27	88.89	Ferredoxin OS=Brassica napus PE=1 SV=1	[more]
FER3_RAPSA	2.786e-27	85.19	Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1	[more]
FER1_SYNP6	1.042e-26	85.19	Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271...	[more]
FER1_SYNE7	1.042e-26	85.19	Ferredoxin-1 OS=Synechococcus elongatus (strain PC...	[more]
FER1_APHFL	5.075e-26	75.93	Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2	[more]
FER_CHLFR	6.607e-26	79.63	Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2	[more]
FER_MASLA	1.897e-25	77.78	Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1...	[more]
FER1_ARATH	3.117e-25	75.93	Ferredoxin-1, chloroplastic OS=Arabidopsis thalian...	[more]
FER1_PHYES	5.449e-25	76.36	Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT