BQ622953

Overview
NameBQ622953
Unique NameBQ622953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622953_ssr84 microsatellite BQ622953_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1335 contig Csv1_Contig1335:92..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.554e-56
Identity = 109/168 (64.88%), Postives = 131/168 (77.98%), Query Frame = 3
Query:  126 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            DY FK+LL+GDSGVGKS +L  FTS  FEE  + TIGVDFK+K++   GK+ KL IWDTAGQERFRTLTSSYYRGAQGII VYDVTRRDTF +L   W +E D+YST +  IK++V NKVD  ++R VS +EG DFAR +GCLF+E SA+  + V Q FEEL+LKILD
Sbjct:    7 DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILD 174          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.311e-52
Identity = 104/163 (63.80%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +A+ G + KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK++ R V + EG+ FAR++  LF+E SAKTR  V+  FEELV KIL
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDKDN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKIL 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.501e-52
Identity = 104/163 (63.80%), Postives = 129/163 (79.14%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DKE+ R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.230e-51
Identity = 103/163 (63.19%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.230e-51
Identity = 103/163 (63.19%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.230e-51
Identity = 103/163 (63.19%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.230e-51
Identity = 103/163 (63.19%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.230e-51
Identity = 103/163 (63.19%), Postives = 128/163 (78.53%), Query Frame = 3
Query:  138 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DKE+ R V + EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:   10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 170          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.366e-48
Identity = 98/171 (57.31%), Postives = 128/171 (74.85%), Query Frame = 3
Query:  114 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKIL 623
            +QE     K+L+IG+SGVGKS+LLL FT DTF+ E + TIGVDFK+K + + G K KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDV+ + +F  L D W  E++ +ST  D +K+LVGNK+D+ +   V+K EG+ FAR++  LF+E SAKT   V+  FEELV KI+
Sbjct:    3 EQEIITTLKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKL-DAWLNELETFSTKHDMVKMLVGNKIDRANHE-VTKDEGLKFARKHHMLFIEASAKTNDGVQCAFEELVEKII 171          
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.834e-46
Identity = 91/170 (53.53%), Postives = 131/170 (77.06%), Query Frame = 3
Query:  120 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVKQCFEELVLKILD 626
            E D  +K+LLIGDS VGK++++  F+ DTF+E L  TIGV+FK+K V + GKK+ L IWDTAGQE+FR L SSYYRGA GII+ YDVT+R++F NL + W  E++ ++   + +KLLVGNK+DKE+ R V+++EG +FA++   LF+ECSAK+++ ++Q FEEL  KI++
Sbjct:    2 EEDKQYKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNL-NYWLNEVENFANRSNLVKLLVGNKIDKEN-REVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIE 169          
The following BLAST results are available for this feature:
BLAST of BQ622953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTV3_VOLCA2.554e-5664.88GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
RB18B_DANRE1.311e-5263.80Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RAB18_CHICK8.501e-5263.80Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_RAT3.230e-5163.19Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB3.230e-5163.19Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE3.230e-5163.19Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN3.230e-5163.19Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_BOVIN3.230e-5163.19Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RB18A_LYMST4.366e-4857.31Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAB18_DICDI1.834e-4653.53Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00044 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00044 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622953 ID=BQ622953; Name=BQ622953; organism=Citrus sinensis; type=EST; length=649bp
GCCTCCACATTGCTGAACATTTTATGAAAACATCACCTTCAGATCCAAAC
CCATCAGCTTGAACCCAAAAGTCTTCATTTTTATTTGTTTGTTTGATGGC
TTCTTCAACGAGTCAGCAGGAGTTCGATTACTTGTTTAAGTTGCTGTTAA
TTGGAGATTCTGGGGTTGGCAAGAGTACTTTGCTATTGAGTTTCACTTCT
GATACCTTTGAGGAGCTCTCTCCTACCATTGGTGTGGATTTTAAGATAAA
GCATGTTGCTCTTGGTGGTAAAAAAATGAAGCTTGCCATTTGGGACACGG
CTGGGCAGGAAAGATTTAGAACACTAACTAGTTCCTATTACAGGGGAGCC
CAAGGGATAATCATGGTTTATGATGTGACACGACGGGATACATTTACCAA
CCTAGCCGATATTTGGGCTAAAGAAATTGATCTGTACTCAACAAATCAAG
ACTGCATCAAGTTGCTTGTTGGAAACAAAGTTGATAAGGAAAGTGAAAGG
GTTGTCAGCAAAAAAGAGGGTATCGACTTCGCTAGGGAATACGGCTGCCT
TTTTCTGGAGTGTAGTGCTAAAACTCGAGTCAATGTAAAGCAGTGCTTTG
AGGAGCTTGTTTTAAAGATTTTGGACCCCCAAGTCTGTTGAGCGAGGGC
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