BQ622964

Overview
NameBQ622964
Unique NameBQ622964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2846 contig Csv1_Contig2846:69..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 2.841e-73
Identity = 132/183 (72.13%), Postives = 155/183 (84.70%), Query Frame = 1
Query:    1 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNAAVPIA 549
            +DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++AEKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN   Q EDF+LEP+ YEM+P+ VPEGYVFVLGDNRN SFDSHNWGPLPI+NI+GRSVFRYWPPS+VSD++      +  AV ++
Sbjct:  185 EDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIAEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQAEDFVLEPIDYEMEPMFVPEGYVFVLGDNRNKSFDSHNWGPLPIKNIIGRSVFRYWPPSKVSDIIHHEQVSQKRAVDVS 367          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 272.322 bits (695), Expect = 1.079e-72
Identity = 132/186 (70.97%), Postives = 156/186 (83.87%), Query Frame = 1
Query:    1 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPIL---QEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDPYAMKNAAVPIA 549
            +DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLD GDR++AEKVSYFF++PEVSDIVIF+APPIL    E G+SS DVFIKRIVA+ GD VEV  GKL VN + Q+EDF+LEP++YEM+P+ VP+GYVFVLGDNRN SFDSHNWGPLPIENIVGRSVFRYWPPS+VSD +    A+    V ++
Sbjct:  155 EDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPMFVPKGYVFVLGDNRNKSFDSHNWGPLPIENIVGRSVFRYWPPSKVSDTIYHDQAITRGPVAVS 340          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 6.343e-65
Identity = 113/166 (68.07%), Postives = 139/166 (83.73%), Query Frame = 1
Query:    1 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVS 498
            DDA+  F A+ VS  F+ F+AEPR IPS SM PT DVGDR++AEKVSY+F++P  +DIVIF++PP+LQE+G++  DVFIKRIVA  GD VEVH GKL+VNGVA++E FILEP  YEM P+ VPE  VFV+GDNRNNS+DSH WGPLP++NI+GRSVFRYWPP+RVS
Sbjct:  113 DDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRVS 278          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803) GN=lepB1 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.745e-41
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 1
Query:   25 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSR 492
            AL ++ L + F+AEPR IPS SM PTL+ GDR++ EKVSY F  P+V DI++F  P +LQ  G+  G  FIKR++A  G  VEV+ G +  +G    E++ILEP  Y +  V VP+G VFV+GDNRNNS DSH WG LP +NI+G ++FR++P SR
Sbjct:   23 ALVLALLLRFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNLPAVRVPDGQVFVMGDNRNNSNDSHVWGFLPQQNIIGHALFRFFPASR 178          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP2_SYNY3 (Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803) GN=lepB2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.545e-37
Identity = 78/168 (46.43%), Postives = 105/168 (62.50%), Query Frame = 1
Query:   10 KAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDD 513
            K   TA+ ++   ++F+AE R IPS+SM PTL + DR++ EK+SY  + PE  +IV+F     L+   F   D FIKRI+   GD V V  G + VNG   DE++I  P AYE  PV VP+    VLGDNRNNS+DSH WG +P E ++GR+  R+WP  RV  + DD
Sbjct:   26 KTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERGEIVVFNPTDALKAKNFH--DAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYEYGPVKVPDDQYLVLGDNRNNSYDSHYWGFVPREKLLGRAFVRFWPVPRVGLLTDD 191          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.627e-36
Identity = 70/156 (44.87%), Postives = 103/156 (66.03%), Query Frame = 1
Query:   49 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSRVSDMLDDP 516
            ++F+AE R IPS SM PTL+V DR++ EK+SY F  P   DI++F     L++   S  + FIKR++   G+ V+V GG++L+NG   +E++I  P  Y+  P  VP     VLGDNRNNS+DSH WG +P +NI+GR+V R+WP +R+ ++   P
Sbjct:   46 RTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGPEKVPADSFLVLGDNRNNSYDSHFWGYVPRQNIIGRAVVRFWPVNRLGELGPPP 201          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP_MYCTU (Probable signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20
Identity = 71/213 (33.33%), Postives = 99/213 (46.48%), Query Frame = 1
Query:    7 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVIFRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFI------LEPLAY-----EMDPVVVPEGYVFVLGDNRNNSFDSHNWGPL-----------PIENIVGRSVFRYWPPSR 492
            A  A  A+ + ++  +F+A P  IPS SM PTL      VGDRI+ +K+SY F  P+  D+++FR PP                      L  IGF   D    +KR++A  G  V+      L VNG    E ++       +P  Y     E  PV VP G V+V+GDNR +S DS    PL           P+ N++G++    WPPSR
Sbjct:   69 AVLAVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIVFRGPPSWNVGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGRPLKEPYLDPATMMADPSIYPCLGSEFGPVTVPPGRVWVMGDNRTHSADSRAHCPLLCTDDPLPGTVPVANVIGKARLIVWPPSR 281          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP_MYCLE (Probable signal peptidase I OS=Mycobacterium leprae GN=lepB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.808e-19
Identity = 67/217 (30.88%), Postives = 99/217 (45.62%), Query Frame = 1
Query:   16 AFTALTVSFLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVIFRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNG----------VAQDEDFILEP-LAYEMDPVVVPEGYVFVLGDNRNNSFDSH------------------NWGPLPIENIVGRSVFRYWPPSR 492
            A  A+ + ++  +F+A P  IPS SM PTL      VGDRI+ +K++Y F  P+  D+++F+ PP                      L  +GF   D    +KR++A  G  V+      L VNG          V  + D    P L  E  PV VP+G ++V+GDNR +S DS                   N G +P+ N++G++    WPPSR
Sbjct:   60 AVIAIGLYYVMLTFVARPYLIPSESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRSVQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPYLRPVTMNADLSFSPCLGSEFGPVTVPQGRLWVMGDNRIHSADSRYHCNSTDVVNGLSCTGDPNSGTVPVSNVIGKARVVVWPPSR 276          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP_PSEFL (Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.401e-17
Identity = 70/219 (31.96%), Postives = 100/219 (45.66%), Query Frame = 1
Query:   10 KAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEV------------SDIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFI----------------LEPLAYEMDPVV------------VPEGYVFVLGDNRNNSFDSHNW----------GPLPIENIVGR--SVFRYWPPSRVSDM 504
            K+ F  L +  + +SFL EP  IPS SM PTLDVGD IL  K SY  + P +             D+++FR P        S  +V +IKR+V   GD V     K L +NG +  E  +                L  + +E+   +            VP G+ F++GDNR+NS DS  W          G +P ENIVG+  +V+  WP  ++S +
Sbjct:   64 KSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLDVGDFILVNKFSYGIRLPVIDKKVIEVGDPQRGDVMVFRYP--------SDPNVNYIKRVVGLPGDVVRYTSDKRLFINGESVAEKLLGAEPNTLGSAELYQEKLGAVEHEIRKEMSRYRAMPDGQWKVPAGHYFMMGDNRDNSNDSRYWDDPNIPKDLLGMVPDENIVGKAFAVWMSWPEPKLSHL 274          
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Match: LEP_STAAC (Signal peptidase IB OS=Staphylococcus aureus (strain COL) GN=spsB PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.169e-16
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 1
Query:   25 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPV------------------VVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWP 483
            A  + F+   F+  P +I   SM+PTL  G+R+    V Y     E  ++V+F A         +  D ++KR++   GD VE     L VNG  QDE ++   L ++                      V+P+G   VLGDNR  S DS  +G +  + IVG+  FR+WP
Sbjct:   15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHA---------NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWP 176          
The following BLAST results are available for this feature:
BLAST of BQ622964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TPP2_ARATH2.841e-7372.13Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH1.079e-7270.97Thylakoidal processing peptidase 1, chloroplastic ... [more]
PLSP1_ARATH6.343e-6568.07Chloroplast processing peptidase OS=Arabidopsis th... [more]
LEP1_SYNY33.745e-4151.92Probable signal peptidase I-1 OS=Synechocystis sp.... [more]
LEP2_SYNY39.545e-3746.43Probable signal peptidase I-2 OS=Synechocystis sp.... [more]
LEP_PHOLA3.627e-3644.87Signal peptidase I OS=Phormidium laminosum GN=lepB... [more]
LEP_MYCTU2.790e-2033.33Probable signal peptidase I OS=Mycobacterium tuber... [more]
LEP_MYCLE1.808e-1930.88Probable signal peptidase I OS=Mycobacterium lepra... [more]
LEP_PSEFL8.401e-1731.96Signal peptidase I OS=Pseudomonas fluorescens GN=l... [more]
LEP_STAAC4.169e-1630.99Signal peptidase IB OS=Staphylococcus aureus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00055 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00055 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622964 ID=BQ622964; Name=BQ622964; organism=Citrus sinensis; type=EST; length=552bp
GATGATGCCAAGGCCGCCTTTACGGCTTTGACTGTTAGTTTCTTGTTCAA
GTCGTTTTTGGCTGAGCCCAGATCCATTCCATCGGCTTCTATGAACCCTA
CCCTGGATGTTGGTGACCGGATTTTGGCAGAGAAGGTTTCATACTTTTTC
AAAAGGCCTGAGGTATCTGATATAGTGATCTTTAGGGCACCTCCGATCTT
GCAGGAAATTGGTTTCAGTTCTGGTGATGTATTCATAAAAAGGATAGTGG
CAACGGCTGGAGATTGTGTCGAAGTTCATGGTGGGAAACTGCTTGTAAAT
GGTGTTGCTCAAGATGAAGATTTCATTCTGGAGCCACTAGCTTATGAAAT
GGACCCAGTGGTTGTGCCTGAAGGTTATGTATTTGTATTGGGAGACAATC
GTAATAACAGCTTTGATTCTCATAACTGGGGTCCGCTTCCTATTGAGAAC
ATCGTTGGTAGGTCTGTGTTTCGTTATTGGCCTCCGTCCAGAGTATCCGA
CATGTTAGATGATCCTTATGCAATGAAGAATGCTGCTGTGCCAATCGCGT
GA
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