BQ622966

Overview
NameBQ622966
Unique NameBQ622966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:428..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.414e-44
Identity = 81/95 (85.26%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 285
            CARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  126 CARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.042e-43
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 282
            CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  126 CARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.667e-43
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 279
            CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:   55 CARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.568e-42
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 279
            CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  126 CARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.484e-41
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 279
            CARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  126 CARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.707e-40
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 279
            CARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  126 CARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 8.029e-40
Identity = 74/92 (80.43%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 276
            CARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  126 CARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.187e-37
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 285
            CARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:  126 CARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.856e-37
Identity = 75/93 (80.65%), Postives = 82/93 (88.17%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 279
            CARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:  126 CARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.362e-37
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 1
Query:    1 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 279
            CARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  126 CARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
The following BLAST results are available for this feature:
BLAST of BQ622966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_VITRI1.414e-4485.2660S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME2.042e-4389.3660S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_TOBAC2.667e-4390.3260S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_EUPES6.568e-4287.1060S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH9.484e-4183.8760S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH4.707e-4081.7260S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_PINTA8.029e-4080.4360S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL103_ARATH2.187e-3777.8960S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL10_MAIZE2.856e-3780.6560S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ORYSJ6.362e-3779.5760S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00057 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00057 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622966 ID=BQ622966; Name=BQ622966; organism=Citrus sinensis; type=EST; length=426bp
TGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGA
CAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGT
TTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAG
TTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCC
AGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAAC
GCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGT
CTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCATTTC
GTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTA
TTTGGTTTAACTATGTGATCCTTGCA
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