BQ622980

Overview
NameBQ622980
Unique NameBQ622980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3736 contig Csv1_Contig3736:316..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.944e-23
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   10 VAAICTLVV--LLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            ++ +C +VV  L L     V+ AVTC+PT+LSSCV AIT  + PS  CCSK+K Q+PCLC Y++NPSL++++N+P A++V S CG  +P C
Sbjct:    9 MSVVCAVVVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.164e-21
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   73 VTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            VTCSP QLS C+  I S  P    CC K++EQ+PCLC YL+NPSLR+++N+PNAR++AS CG P P+C
Sbjct:    1 VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.318e-15
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   16 AICTLVVLLLAAETQVSVAVTCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            A+  ++V+ LAA         C P QL+ C SAI   T PS  CC  ++ Q+ CLCQY+++P+   ++++P+AR   + CG P P C
Sbjct:   16 AVMMVMVVTLAAGADAGAGAACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.836e-12
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   16 AICTLVVLLLAAETQVSVAV---TCSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            A+  L V ++AA     V V   +C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   16 AICTLVVLLLAAETQVSVAVT---CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            A+  L V ++AA     V V    C+  QL+ C  AI     P+  CCS ++ Q+ C CQ+ ++P   +++N+PNAR+  S+CG   P C
Sbjct:    6 AVLVLAVAMVAACGGGVVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   79 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            C  +QL+ C SAI S   PS  CC  ++ Q+PC CQY ++P+  ++I +P+AR    +CG   P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   79 CSPTQLSSCVSAITSSTPPSRLCCSKIKEQKPCLCQYLRNPSLRKFINTPNARRVASTCGTPFPKC 276
            C  +QL+ C SAI S   PS  CC  ++ Q+ C CQY ++P+  ++I +P+AR   ++CG   P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of BQ622980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NLTP_VIGUN3.944e-2350.55Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR2.164e-2158.82Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_HORVU2.318e-1537.93Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTPX_ORYSI1.836e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ2.398e-1235.56Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2P_WHEAT9.114e-1240.91Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLT2G_WHEAT7.716e-1139.39Non-specific lipid-transfer protein 2G OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00071 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00071 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622980 ID=BQ622980; Name=BQ622980; organism=Citrus sinensis; type=EST; length=465bp
GCTTCGCATGTAGCAGCCATTTGCACATTGGTGGTTCTTCTTCTGGCAGC
TGAAACACAAGTCTCAGTGGCAGTGACATGCAGCCCAACCCAACTGAGCT
CTTGTGTTAGCGCCATCACATCTTCAACTCCACCATCAAGGCTCTGCTGC
AGCAAGATCAAAGAACAGAAGCCTTGCCTTTGCCAGTACCTTCGAAACCC
GAGCCTCAGGAAGTTTATCAACACCCCAAATGCCAGGAGAGTTGCTAGCA
CTTGTGGCACTCCCTTCCCAAAATGCTAAATTTCTCTTCTCTCCCATTTC
TCTTTGCTGCATTAATCTCGTTTAATGCATAGTCTAATATCGAGTGGTGA
TTGAAGAGAATTATGAGTTAGTAGTTTAATTGTGCTGTGTTTTATGTTGG
TGGTGGTGCGATACTTGCGGAAACAATGTTGGGGGGCATGGGTTACATCA
CATGGCACCAACATC
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