BQ623018

Overview
NameBQ623018
Unique NameBQ623018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_DICDI (Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.260e-44
Identity = 77/128 (60.16%), Postives = 107/128 (83.59%), Query Frame = 3
Query:   24 NVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            N++D+PLSKGK E+++S+FAFLFSE++QY Q ++    ELE++L D GY++G R+LELLC R+K ++RET+LLGILSF+H+TVWK LFGK ADSLEK TE +DEYMIS+  ++VN+FIS+PK + + N
Sbjct:    7 NIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLCVREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLN 134          

HSP 2 Score: 31.187 bits (69), Expect = 1.260e-44
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  425 AGIVRGVLDSAGFPAVVTAHFV 490
            AGI+ G+L SA FPA VTAH V
Sbjct:  140 AGIIEGILCSAEFPARVTAHNV 161          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TRS31_SCHPO (Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe GN=trs31 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.594e-34
Identity = 66/129 (51.16%), Postives = 95/129 (73.64%), Query Frame = 3
Query:   24 NVLDKPLSKGKQ-EVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            +V ++ L+K +  +V+LS+FAF+FSEL+Q  Q+QV  I E E +L + GY VG +++EL+  R++  +RETR+LGIL ++HS+VWK LFGK ADSLEK  E  DEYMI +   L+N+FIS+PK+M   N
Sbjct:   27 SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLN 155          

HSP 2 Score: 31.9574 bits (71), Expect = 3.594e-34
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  425 AGIVRGVLDSAGFPAVVTAHFVP 493
            AGI+ G LDSA FP   +AH VP
Sbjct:  161 AGIIEGFLDSAQFPCKASAHSVP 183          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_HUMAN (Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 3
Query:   21 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L  R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS+PK+  T N
Sbjct:   10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLN 138          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_CHICK (Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 3
Query:   21 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            S +L++PL + + EVSLSAFA LF ELVQY Q +V ++AEL+ +L   G+ VG R+L+ L  R++G RRET++L +L FV   VW+ LFGK AD LE+  + +  Y + E+E LVN FIS+P++  T N
Sbjct:   10 SPLLERPLGRPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLDPLVSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFISVPRENSTLN 138          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_BOVIN (Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.921e-29
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 3
Query:   21 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            S +L++ L++ + EVSLSAFA LFSELVQ+ Q++V  +AEL+ RL   G  VGARVL+ L  R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS+PK+  T N
Sbjct:   10 SALLERALARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLN 138          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_MOUSE (Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 3
Query:   21 SNVLDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            S +L++ L + + EVSLSAFA LFSELVQ+ Q++V ++AEL+ RL   G  VGARVL+ L  R+KG RRET++LG L FV   VWK LFGK AD LE+  +    + I E+E L+N +IS+PK+  T N
Sbjct:   10 SALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLN 138          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_PLAFA (Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.640e-19
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 3
Query:   30 LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L +++K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PKD G  N
Sbjct:    8 IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYKNK-VKRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPKDYGNIN 131          

HSP 2 Score: 26.1794 bits (56), Expect = 1.640e-19
Identity = 17/35 (48.57%), Postives = 20/35 (57.14%), Query Frame = 2
Query:  386 KRYGDI*FVGHLFAGIVRGVLDSAGFPAVVTAHFV 490
            K YG+I       AGIV G L S+ F A VTAH +
Sbjct:  125 KDYGNINCAAFA-AGIVEGFLCSSEFQADVTAHTI 158          
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Match: TPPC5_PLAF7 (Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.640e-19
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 3
Query:   30 LDKPLSKGKQEVSLSAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFN 407
            ++K L++ KQ+VSLSAF+ LFSE+VQY   +      +E  L + G  VG ++ E L +++K  +R   ++ IL+F+   VWK LF   +D L K  +   EYMI +K +L+N+FI++PKD G  N
Sbjct:    8 IEKELNRIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKLNEYLTYKNK-VKRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPKDYGNIN 131          

HSP 2 Score: 26.1794 bits (56), Expect = 1.640e-19
Identity = 17/35 (48.57%), Postives = 20/35 (57.14%), Query Frame = 2
Query:  386 KRYGDI*FVGHLFAGIVRGVLDSAGFPAVVTAHFV 490
            K YG+I       AGIV G L S+ F A VTAH +
Sbjct:  125 KDYGNINCAAFA-AGIVEGFLCSSEFQADVTAHTI 158          
The following BLAST results are available for this feature:
BLAST of BQ623018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPPC5_DICDI1.260e-4460.16Trafficking protein particle complex subunit 5 OS=... [more]
TRS31_SCHPO3.594e-3451.16Transport protein particle subunit trs31 OS=Schizo... [more]
TPPC5_HUMAN1.471e-2951.94Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_CHICK1.921e-2948.84Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_BOVIN1.921e-2951.94Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_MOUSE3.277e-2951.94Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_PLAFA1.640e-1940.48Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_PLAF71.640e-1940.48Trafficking protein particle complex subunit 5 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00109 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00109 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623018 ID=BQ623018; Name=BQ623018; organism=Citrus sinensis; type=EST; length=494bp
TAGGGAAGATCAAGCAGTACTCAAACGTCCTCGACAAACCCCTCAGCAAA
GGCAAACAAGAGGTAAGTTTGAGTGCGTTTGCATTTCTGTTCTCGGAGCT
TGTTCAGTACAATCAAACGCAAGTTGACAATATTGCTGAACTAGAGCGAA
GGTTGGAGGATGCAGGCTATGCTGTCGGTGCTCGAGTTCTGGAACTCCTT
TGTCATAGGGATAAGGGAAACAGAAGGGAGACAAGATTGCTGGGTATCTT
GTCCTTTGTACACAGCACTGTTTGGAAGGTCTTATTTGGAAAGGTAGCTG
ATTCACTTGAGAAAGGAACTGAACATGAAGACGAATACATGATCAGTGAG
AAAGAGCTCCTTGTAAACAGGTTTATTTCAATTCCAAAAGATATGGGGAC
ATTTAATTTGTGGGGCATTTGTTTGCTGGAATAGTAAGGGGTGTTCTGGA
TAGTGCTGGCTTCCCTGCAGTAGTAACAGCACATTTTGTGCCCT
back to top