BQ623043
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_BOVIN (mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 8.210e-51 Identity = 105/209 (50.24%), Postives = 134/209 (64.11%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 622 E K+ ++ +R V+ YK +++FS NMRN K K+ R K SR F G NKVM VALGRS SDE + LH+VSK L G GL TN KEEV+ F KY + D+AR G+ AT V L GPLEQF H MEP LR+ G+P L KGVV L+SD+ VC+EG L+PE AR+L+L G +MA FK+ + W A+ F+ + L ES ES Sbjct: 21 ELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYTEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGDDLPESAPES 229
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_MOUSE (mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50 Identity = 106/209 (50.72%), Postives = 133/209 (63.64%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 622 E K+ ++ +R V+ YK +++FS NMRN K K+ R K SR F G NKVM VALGRS SDE + LH+VSK L G GL TN KEEV F KY + DFAR G+ AT V L GPL+QF H MEP LR+ G+P L KGVV L+SD+ VC+EG L+PE ARIL+L G +MA FK+ + W A+ F+ + L ES ES Sbjct: 21 ELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDDDLPESAPES 229
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_HUMAN (mRNA turnover protein 4 homolog OS=Homo sapiens GN=MRTO4 PE=1 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 3.449e-49 Identity = 102/209 (48.80%), Postives = 132/209 (63.16%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAED--FELYREGLDESDVES 622 E K+ ++ +R V+ YK +++FS NMRN K K+ R K SR F G NKVM VALGRS SDE + LH+VSK L G GL TN KEEV F KY + D+AR G+ A V L GPLEQF H MEP LR+ G+P L +GVV L+SD+ VC+EG L+PE AR+L+L G +MA FK+ + W ++ F+ + L ES ES Sbjct: 21 ELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_DICDI (mRNA turnover protein 4 homolog OS=Dictyostelium discoideum GN=mrt4 PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.404e-42 Identity = 81/202 (40.10%), Postives = 127/202 (62.87%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFELYREGLDE 607 E K+ +V++I++ V+ YK IY+F+FENMRN K K R + S+F G NKV+ V LG+S DE++P LHK+++ L G GLF TN PK++V F Y + DF R+G + E + + EGP+ TH ME +LR G+P L GV+ + ++ +CE G ++PE +++L+L +++ FK H+ W+ ++F L E E Sbjct: 21 EKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEWSTSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYSEKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGVAVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTLCEEESQE 222
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_NEUCR (mRNA turnover protein 4 homolog OS=Neurospora crassa GN=NCU07547 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33 Identity = 78/213 (36.62%), Postives = 113/213 (53.05%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ------------FTHEMEPFLRKQGMPVRLNKGVVEL------VSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAEDFEL 586 E KE + +IR + NY+ +VFS +NMRN K+ R+++ R F G K+ ALG + D GL K+SK+L G+ GL TN E++ F DFAR GS AT + +P GPL +H +EP LR+ GMP R+ KG V L D+V+C+EG+ L R+L+L I ++ F++ L+ WSA E+ Sbjct: 21 EQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKELNDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLTQVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVCLGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_SCHPO (mRNA turnover protein 4 homolog OS=Schizosaccharomyces pombe GN=SPBC11G11.03 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29 Identity = 74/219 (33.79%), Postives = 113/219 (51.60%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQ------------FTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE----DFELYREGLDES 610 E K + + ++ +++++ +++F NMRN K R+ K SR F+G KVM ALG + +E + K++K L G GL TN +EV F + DFAR G+ A +P GP+ TH +EP +R+ GMP L GVV L++DF +C EG+ L R+L+L GI A FK+ L+ +S + +F G DE+ Sbjct: 21 EGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYSKKGASVEFLQSAPGADEA 239
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_CANGA (mRNA turnover protein 4 homolog OS=Candida glabrata GN=MRT4 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24 Identity = 64/195 (32.82%), Postives = 104/195 (53.33%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLR-KQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKL 547 E+KE I + +R A++ YK ++V +++R +E RE S+ +G KV++ ALG + E + L K++K+ G GL TN + V+ F Y D++R S A E+PEG P+E+ H +EP LR K MP ++ G + L + ++VC+EG+ L A IL+ G+ +A FK+ Sbjct: 21 ENKERIFDEVREALDTYKYVFVLQLDDVRTPVLQEIREAWVGSKLLMGKRKVLEKALGTTREQEYKENLSKLTKYCSGVIGLLFTNETLDTVKEYFEAYSRLDYSRPNSRAPITFEVPEGIVYSRGGQIPIEEDVPMAHSLEPTLRNKYEMPTKIKAGKITLEAPYLVCKEGQKLDVRQALILKQFGVALAQFKV 215
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_ASHGO (mRNA turnover protein 4 homolog OS=Ashbya gossypii GN=MRT4 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.156e-20 Identity = 63/204 (30.88%), Postives = 100/204 (49.02%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLR-KQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLICRWSAE 574 E+KE I + +R A++ Y+ ++V E++R +E R S+ +G KV++ ALG + E + + + K G GL T+ E V + F +Y D++R S A +VE+P G P E H +EP LR K MP R+ G + L ++VCE G+ L A IL+ G+ A F++ L + E Sbjct: 21 ENKERIFDEVRQALDTYRYVWVLRLEDVRTPVLQEIRSAWAGSKLIMGRRKVLEKALGGTRETEYKENVSGLVKQCEGMCGLLFTDETPETVTAYFREYRKADYSRAKSRAPLRVEIPAGVVYSRGGQVPAEDDVPMVHSLEPTLRNKFKMPTRIQNGKITLEQPYLVCEAGETLDVRQALILKQFGVAAAEFRVKLAAYYDGE 224
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: MRT4_YEAST (mRNA turnover protein 4 OS=Saccharomyces cerevisiae GN=MRT4 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20 Identity = 59/195 (30.26%), Postives = 99/195 (50.77%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFLGSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEG---------PLEQ---FTHEMEPFLR-KQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKL 547 E+KE I + +R A++ Y+ ++V +++R +E R S+ +G KV+Q ALG +E + L+++SK G TGL T+ V+ F Y D++R + A +PEG P E+ H +EP +R K +P ++ G + + S ++VC EG+ L A IL+ GI + FK+ Sbjct: 21 ENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSWAGSKLIMGKRKVLQKALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSYVRSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKFEIPTKIKAGKITIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKV 215
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12 Identity = 52/190 (27.37%), Postives = 90/190 (47.37%), Query Frame = 2 Query: 2 EHKEVIVNSIRNAVENYKSIYVFSFENMRNLKFKEFREQIKPSRFFL-GSNKVMQVALGRSVSDEIQPGLHKVSKFLCGNTGLFLTNMPKEEVESLFNKYEDYDFARTGSTATEKVELPEGPLEQFTHEMEP----FLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPESARILRLLGIKMATFKLHLI 556 E K +R +E YKS++V +N+ + + E R++++ L G N +++ A+ +SD P K+ F+ G G TN P E++++ AR G+ A E + + MEP F + G+P ++ +G +E+VSD V + G + A +L LL I TF L ++ Sbjct: 6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWV-----RAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVV 188 The following BLAST results are available for this feature:
BLAST of BQ623043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623043 ID=BQ623043; Name=BQ623043; organism=Citrus sinensis; type=EST; length=695bpback to top |