BQ623062

Overview
NameBQ623062
Unique NameBQ623062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10009 contig Csv1_Contig10009:1068..1711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.329e-110
Identity = 194/210 (92.38%), Postives = 201/210 (95.71%), Query Frame = 2
Query:    2 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEAKA 631
            FSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIEARKPDFDA+IDPQKQYADAVIEVLPT LIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTI WIPCGRKLTCSYPGIKF+Y PD+YF HEVS+LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+I +KA A  EAKA
Sbjct:  186 FSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAFIDPQKQYADAVIEVLPTTLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANKATARAEAKA 395          
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 397.127 bits (1019), Expect = 3.972e-110
Identity = 191/208 (91.83%), Postives = 199/208 (95.67%), Query Frame = 2
Query:    2 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 625
            FSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIEARKPDFDA+IDPQKQYADAVIEVLPTQLIPDDNEGKVLRV+LIMKEG+K+F+PVYLFDEGSTI WIPCGRKLTCSYPGIKFSYGPD YFG EVS+LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII  +A  P EA
Sbjct:  194 FSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAFIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVKLIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAERAGVPAEA 401          
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 8.283e-108
Identity = 189/208 (90.87%), Postives = 197/208 (94.71%), Query Frame = 2
Query:    2 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 625
            FSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIP DNEGKVLRVRLI KEGV+YFSPVYLFDEGS+I WIPCGRKLTCSYPGIKF YGPD YFG+EV++LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+I SK AAP  A
Sbjct:  187 FSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPGDNEGKVLRVRLIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIASKTAAPAAA 394          
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.368e-102
Identity = 175/208 (84.13%), Postives = 195/208 (93.75%), Query Frame = 2
Query:    2 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 625
            FSIYLDISNEVKFAWKIQRDM ERGHSLESIKASIE+RKPDFDAYIDPQKQ+AD VIEVLPT+LIPDD+EGKVLRVR+I KEGVK+F+PVYLFDEGSTI WIPCGRKLTCSYPGIKFSYGPD ++G+EV+++EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ++ S++ A   A
Sbjct:  192 FSIYLDISNEVKFAWKIQRDMKERGHSLESIKASIESRKPDFDAYIDPQKQHADVVIEVLPTELIPDDDEGKVLRVRMIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVASRSTATATA 399          
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.496e-90
Identity = 158/206 (76.70%), Postives = 183/206 (88.83%), Query Frame = 2
Query:    2 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPV 619
            F IYLDIS+++KFAWKIQRDM ERGHSLESIK+SI ARKPDFDAYIDPQK+ AD +I+VLPTQL+PDD +G+ LRVRLIMKEG K F PVYLFDEGSTI WIPCGRKLTCS+PGIK  YGPD ++G EVS+LEMDG+FD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I+  K   PV
Sbjct:  172 FKIYLDISDDIKFAWKIQRDMAERGHSLESIKSSIAARKPDFDAYIDPQKKDADMIIQVLPTQLVPDD-KGQYLRVRLIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV-KKDVVPV 375          
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.511e-80
Identity = 138/205 (67.32%), Postives = 172/205 (83.90%), Query Frame = 2
Query:    2 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAP 616
            F +YLDIS EVK  WKIQRDM ERGH+ E I ASI ARKPDF AYI+PQKQYAD VI+VLPT+LI +D E K+LRVRL+ KEGVK+F P YLFDEGSTI+W PCGRKLTC+YPGIK  YGPD + G+EVS+LE+DG+F+ L+E++YVE+HLS   TK+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YEQ +T++A  P
Sbjct:  127 FGVYLDISEEVKINWKIQRDMAERGHTYEDILASINARKPDFTAYIEPQKQYADVVIQVLPTRLI-EDKESKLLRVRLVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQ-LTAEAKVP 329          
The following BLAST results are available for this feature:
BLAST of BQ623062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KPPR_ARATH2.329e-11092.38Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_WHEAT3.972e-11091.83Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_MESCR8.283e-10890.87Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL1.368e-10284.13Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_CHLRE3.496e-9076.70Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY32.511e-8067.32Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00153 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00153 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623062 ID=BQ623062; Name=BQ623062; organism=Citrus sinensis; type=EST; length=644bp
CTTTAGTATCTATTTGGACATTAGCAATGAGGTTAAATTTGCATGGAAAA
TTCAGAGAGACATGACAGAGCGAGGACACAGTCTTGAGAGCATCAAGGCT
AGTATTGAAGCCCGAAAGCCAGATTTTGATGCCTATATTGATCCACAAAA
GCAATATGCTGATGCAGTGATTGAAGTGTTACCAACCCAGTTGATTCCGG
ATGATAATGAAGGAAAGGTTTTGAGAGTTAGGTTGATCATGAAAGAAGGA
GTGAAGTACTTCAGCCCGGTTTATCTGTTTGATGAAGGATCAACTATCGA
ATGGATACCTTGCGGAAGGAAGCTTACATGTTCTTACCCCGGCATCAAAT
TCTCTTATGGCCCTGACGCTTACTTTGGCCATGAGGTCTCGATTTTGGAA
ATGGATGGGAAATTTGACAGGTTAGATGAGCTAATTTATGTCGAAAGCCA
TCTAAGCAACTTATCAACCAAGTTCTATGGAGAAGTCACCCAGCAAATGT
TGAAGCATGCCGATTTCCCTGGCAGCAACAACGGAACCGGTCTCTTCCAA
ACTATAGTTGGATTAAAGATTAGGGATCTCTACGAACAAATCATCACCAG
CAAGGCTGCGGCTCCGGTAGAAGCGAAAGCTTAAACACTGCCTT
back to top