BQ623066

Overview
NameBQ623066
Unique NameBQ623066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623066 vs. ExPASy Swiss-Prot
Match: Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 62/127 (48.82%), Postives = 79/127 (62.20%), Query Frame = 2 
Query:   29 KAFKLLLWCSCLTFASLLDQGKGEKCSKYS--PTLQQTQVGFGSPPTFMARVHNNCPMCPVINIHLKCGNFSQALVNPRLLKVISYN--NCVVNSGFPLSPLQTFSFNYSHP-KYVMQPATWSFQCE 394
            K  K LLW S      LL  G G  C   S  P ++QTQV +     F   V N CPMCP+IN+ LKC  F Q+LV+P  L+V+S +  NCVVN G PLSP+QT SFNYS+  ++ ++P +WSFQCE
Sbjct:    3 KPLKFLLWSSLALL--LLQIGSGAICEGKSSEPAVRQTQVKWREGKKFRVEVMNKCPMCPIINLRLKCQGFPQSLVDPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFALRPLSWSFQCE 127
The following BLAST results are available for this feature:
BLAST of BQ623066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1583_ARATH8.443e-2648.82Uncharacterized protein At1g05835 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00157 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00157 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623066 ID=BQ623066; Name=BQ623066; organism=Citrus sinensis; type=EST; length=667bp
GATCAATTGTGTAAATATGCAGAGCCACAAAGCTTTCAAATTACTTCTGT
GGTGCAGTTGCCTCACATTTGCTTCTCTCCTAGACCAAGGTAAGGGAGAG
AAATGCAGCAAATATTCTCCAACTCTGCAACAAACTCAGGTGGGATTCGG
CAGTCCTCCAACATTCATGGCTCGGGTGCATAACAACTGCCCTATGTGTC
CAGTTATTAATATCCACTTGAAATGTGGGAACTTTTCTCAGGCTCTAGTC
AATCCCAGACTGCTCAAGGTGATTTCATACAACAACTGTGTTGTTAACAG
TGGCTTCCCTCTGTCACCGCTACAAACATTTTCTTTCAATTATTCACATC
CCAAGTATGTCATGCAACCCGCTACTTGGTCCTTCCAGTGCGAGTGATGC
CTCATACTCTTCTGTATTTTCTTATGTTTAATTTGCCTCTAGTGTGAACC
AAGCTTAATGCAAAGAGGGTATCTACTTTCCTGTTGAGTTTTTTTCAATA
GCCATATCACCTAAATCTCCGCTAAACCCATTAAAGACAAGTTCAAGTGT
TAGGCTAATGATCCTTCATTAGCGATTTGTAAGCCGAGGAGATTACCAGT
GATGGGTGTCTTAATTTCAATTATGGGGATTTCTCACTGGGGAGTTGTCC
TTGATAACACAGAAACA
back to top