BQ623076

Overview
NameBQ623076
Unique NameBQ623076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8441 contig Csv1_Contig8441:179..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COXBU (50S ribosomal protein L27 OS=Coxiella burnetii GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.206e-25
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:    2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COXBR (50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.206e-25
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:    2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COXB2 (50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.206e-25
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:    2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COXB1 (50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuK_Q154) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.206e-25
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:    2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_COXBN (50S ribosomal protein L27 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:    2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFIRKGPKKRNFVSIEPLE 86          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.581e-25
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VG+GKDHTL+AL EG+V F++ K   R +V V P
Sbjct:    2 AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFALSEGKVSFQR-KAGNRSYVSVIP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_MAGSA (50S ribosomal protein L27 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.984e-25
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 322
            A KK  GS++NGRDS  + LGVKKFGGE VIPGNIIVRQRGT+F+PG  VGMGKDHTL+A   G+V F KHK  GR +V VEP
Sbjct:    2 AHKKAGGSSRNGRDSAGQRLGVKKFGGELVIPGNIIVRQRGTKFYPGTNVGMGKDHTLFATAMGKVSF-KHKAEGRTFVVVEP 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBPA (50S ribosomal protein L27 OS=Vibrio parahaemolyticus GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBHB (50S ribosomal protein L27 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 319
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIE 83          
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Match: RL27_VIBCM (50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.021e-24
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   74 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 328
            A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+AL +G+VKFE    + RK+V +E  E
Sbjct:    2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFALSDGKVKFEVKGPNNRKFVSIETAE 86          
The following BLAST results are available for this feature:
BLAST of BQ623076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL27_COXBU1.206e-2564.7150S ribosomal protein L27 OS=Coxiella burnetii GN=... [more]
RL27_COXBR1.206e-2564.7150S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_COXB21.206e-2564.7150S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_COXB11.206e-2564.7150S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_COXBN2.057e-2564.7150S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_BART14.581e-2567.4750S ribosomal protein L27 OS=Bartonella tribocorum... [more]
RL27_MAGSA5.984e-2568.6750S ribosomal protein L27 OS=Magnetospirillum magn... [more]
RL27_VIBPA1.021e-2465.8550S ribosomal protein L27 OS=Vibrio parahaemolytic... [more]
RL27_VIBHB1.021e-2465.8550S ribosomal protein L27 OS=Vibrio harveyi (strai... [more]
RL27_VIBCM1.021e-2463.5350S ribosomal protein L27 OS=Vibrio cholerae serot... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623076 ID=BQ623076; Name=BQ623076; organism=Citrus sinensis; type=EST; length=540bp
TAGTAATGTTTCCGTATACGGCAGCGTCGCTGATGGATCTGCTGGTGGAT
TAAGCTTGATGTTTAGGCGTTGGGCTACCAAAAAGACGGCTGGATCAACC
AAGAACGGACGTGACTCCAAACCTAAGAATCTTGGGGTGAAAAAATTCGG
TGGTGAGAGGGTGATACCTGGAAACATTATTGTTCGTCAGCGAGGAACAC
GCTTTCATCCTGGAGATTATGTAGGGATGGGCAAGGATCACACCCTTTAT
GCCCTTAAGGAAGGACGTGTCAAATTTGAAAAACACAAGCTTAGCGGTCG
CAAGTGGGTGCATGTTGAACCCAAGGAAGGCCATGTGCTACATCCTCTAT
ATGCAAATGCAACGGCAAATGCTTCTTCACCTCAGCTGGAGACGGCTGCA
TAAAACCCCATTTTATTTGATTATTTAATCAAGCTACTCTTTTCTCTTTT
TCTTCTTCCTTTCTGGACAGAAACTGAAATAAATATGGGTTTTTACTGAA
ACTGTGTACCAGAATTGAATATAAATATTCCTACTGGTTT
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