BQ623084

Overview
NameBQ623084
Unique NameBQ623084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.129e-53
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 2
Query:    2 LSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLV--ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDLEKSQISEKPT 427
            LSNFNSF+GV+YCR HFDQLFKRTGSLEKSF+GTPK  KPE+    E ++A ++S+ F GTRDKC  C + VYP E+V V+G AYHR+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLF++KGNYSQLE +   +  +E  T
Sbjct:   47 LSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189          

HSP 2 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  167 FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGN 373
            F GT  KC  C++TVY  +K+  N   YH++CF+C H   T+  SN+ + +G +YC+HH  QLF+  G+
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGS 72          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 43/130 (33.08%), Postives = 64/130 (49.23%), Query Frame = 2
Query:  104 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ----------LESDLEKSQISEKPTPVQIAAES 451
            PK + P+    +    +  K   KF    R+ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +            S  E  +I E+P  +  A E+
Sbjct:  358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEEILERPAQLANARET 487          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  104 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 382
            PK + P+    +    +  K + KF    ++ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +
Sbjct:  356 PKPLSPDARTSSLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  134 ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 382
            E   A +  + F+  ++ C+ C +TVYP E +  +   +H+SCF+C H    +S  NY +  G++YCK H  QLF+ KGNY +
Sbjct: 3239 EMSRAFQEESAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDE 3321          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  179 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 382
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  179 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 382
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 104          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  179 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 382
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  179 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 382
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YC+ H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDE 105          
The following BLAST results are available for this feature:
BLAST of BQ623084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3_HELAN1.129e-5368.06Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
LIMA1_HUMAN1.142e-1333.08LIM domain and actin-binding protein 1 OS=Homo sap... [more]
LIMA1_MOUSE3.322e-1336.08LIM domain and actin-binding protein 1 OS=Mus musc... [more]
XIRP2_MOUSE4.339e-1337.35Xin actin-binding repeat-containing protein 2 OS=M... [more]
LIMD2_RAT1.069e-1141.18LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN1.396e-1141.18LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN1.823e-1141.18LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
LIMD2_MOUSE2.381e-1139.71LIM domain-containing protein 2 OS=Mus musculus GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00175 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00175 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623084 ID=BQ623084; Name=BQ623084; organism=Citrus sinensis; type=EST; length=633bp
GCTCAGTAACTTCAATTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACT
TTGATCAGCTCTTCAAGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGA
ACACCAAAGATTGTGAAACCTGAAAAGCTCGTTGAAAATGAGAATGCACA
GAAAGTCTCCAACAAGTTTGTGGGCACCAGAGATAAATGTGTGGGATGCG
ATAGGACTGTTTATCCAACTGAGAAGGTTTCTGTAAATGGCGCCGCATAT
CATAGGAGCTGCTTCAAGTGCAGCCATGGAGGTTGCACCATCAGCCCATC
AAATTATATTGCCCATGAGGGGAAACTCTACTGCAAGCATCATCACATAC
AACTCTTCAGGGAGAAAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAG
AAGAGTCAAATCTCTGAGAAGCCAACTCCTGTCCAAATTGCTGCCGAATC
ATAACTTCCAAGTGGATTTTCTTATTTGTAGTATTTTGTGCGTAAATCGT
ATTAATTTCTTAACTTTGTTGGTGGGGGTTGATCCAATTACGATTTGTGG
CACTGGTGTATTTCTTGTGAGGGTTGAGTGTGCTTGAAATAAGTGTTGGC
CCACACTTGTTACCACATTTGCTGCTCATGATA
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