BQ623124

Overview
NameBQ623124
Unique NameBQ623124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623124 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.908e-12
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 2
Query:   35 GKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNYQF 148
            GK AQQV +PVPEGCTDP A N+DPTARSDDG+C Y F
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474          
BLAST of BQ623124 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.908e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 2
Query:   26 FDTGKAAQQV-KVPVPEGCTDPAAANYDPTARSDDGSCNYQF 148
            F  G+AAQQV  VPVPEGCTDP A NYDPTARSDDGSC Y+F
Sbjct:  435 FYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476          
BLAST of BQ623124 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.592e-11
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 2
Query:   35 GKAAQQVKVPVPEGCTDPAAANYDPTARSDDGSCNY 142
            GKAAQQV +PV +GCTDP A NYDPTARSDDGSC Y
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470          
The following BLAST results are available for this feature:
BLAST of BQ623124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RCA_ARATH8.908e-1276.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR8.908e-1278.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.592e-1180.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00215 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00215 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623124 ID=BQ623124; Name=BQ623124; organism=Citrus sinensis; type=EST; length=329bp
TACTCAAAACATTTTTATCATTTGTTTTGATACAGGTAAAGCAGCACAAC
AGGTTAAAGTTCCTGTCCCTGAAGGCTGTACCGATCCAGCTGCAGCAAAC
TATGATCCAACTGCTAGGAGCGACGATGGCAGCTGCAATTACCAATTTTA
GTTTGTATTAGCCATTTAGGTATATTACAAAGGAAAACCATGTCTAAACT
TGCAATTGTGTAAATAATGTATACTTTTTCATCTTTGTTTCTTGGTCCTG
GAAGATGCTTTGTTTCAATCATTCTTTGCAGTTGCAAAACTTCATTTTGT
TGTATTTATAGTTTTGTAATTATACAATG
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