BQ623133

Overview
NameBQ623133
Unique NameBQ623133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig984 contig Csv1_Contig984:36..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623133 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.296e-21
Identity = 62/169 (36.69%), Postives = 96/169 (56.80%), Query Frame = 1 
Query:   28 GCCPLTPEEIGLLLAALGFDKSTRLYLASHKVYGGEARISALRRLFPLMEDKKSLASSEERAGVKGKASLLAALDYYVSMHSNIFISA--SPGNMHNALMGHRTYENLK-TIKPNMALLGQLFLNKSL-SWSEFQQAVVEGH-ENRQGQIRIRKPKQSIYTYPAPDCMC 519
            G CPLTPEE+GL+L A+ FD STR+YLA+ +++GGE  +   R LFP +++  S+  SEE +    +  + +A+DY V + S+IF+     P N  N L+GHR Y   + TI+P+   L  +F+ +     + F++AV     +   G    R   +S YT   P+C C
Sbjct:  307 GKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELSAT-SQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWPECFC 474
The following BLAST results are available for this feature:
BLAST of BQ623133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH3.296e-2136.69DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00224 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00224 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623133 ID=BQ623133; Name=BQ623133; organism=Citrus sinensis; type=EST; length=553bp
TCACTGACGAAGAGCTGAGGAGTCAGGGGCTGTTGCCCATTGACCCCAGA
AGAGATTGGTTTGCTACTTGCAGCATTGGGGTTTGACAAGAGTACTCGTC
TTTATCTTGCCTCCCACAAGGTATATGGTGGAGAAGCTAGGATTTCTGCT
TTACGAAGATTGTTTCCACTAATGGAAGATAAAAAGAGCCTTGCTTCTTC
TGAAGAAAGAGCAGGGGTTAAGGGAAAGGCTTCATTGTTAGCTGCACTGG
ATTACTATGTTAGCATGCACAGCAACATTTTCATCTCTGCTTCCCCAGGA
AATATGCACAATGCATTGATGGGACACCGAACTTATGAGAACTTGAAGAC
TATAAAGCCGAACATGGCATTGCTGGGCCAACTCTTCTTGAACAAAAGCC
TTAGTTGGTCAGAGTTTCAGCAGGCGGTGGTTGAAGGACACGAAAACAGA
CAAGGGCAGATTAGAATAAGAAAACCAAAACAGTCTATATACACGTATCC
TGCTCCTGACTGCATGTGTCACGGTTAAGGTGCTGAGGGATAAGAGTGGC
TTT
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