BQ623152

Overview
NameBQ623152
Unique NameBQ623152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623152_ssr293 microsatellite BQ623152_ssr293:293..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig333 contig Csv1_Contig333:965..1451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 182
            +SD+VLTYEDKEGDWMLVGDVPW MF+ SVKRLRIM TSEA+GLAPR QE   RQRN P+
Sbjct:  180 SSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQKDRQRNNPV 239          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.437e-20
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRNRPI 182
            +S++VLTYEDKEGDWMLVGDVPW MF+ SVKRLR+M+TSEA GLA R QE N RQR +P+
Sbjct:  188 SSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNERQRKQPV 247          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.136e-16
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLA 137
            +S  VLTYEDKEGDWMLVGDVPWGMF+GSV+RLRIM+TSEATG A
Sbjct:  198 SSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRN 173
            +S+YV +YEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR  E   + R+
Sbjct:  187 SSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQESNGRQRN 173
            S+YV+TYEDK+ DWMLVGDVPW MF+ S K+LRIM++SEA GLAPR+ E   R RN
Sbjct:  251 SEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVME-KCRSRN 305          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.678e-15
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            SDYV TYEDK+GDWMLVGDVPW MF+ S KR+RIM+ SEA GLAPR  E
Sbjct:  182 SDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALE 230          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.416e-15
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    6 SDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            S+YV TYEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR  E
Sbjct:  223 SEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAME 271          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQ 149
            +++Y LTYED++GDWMLVGDVPW MF+ SVKRLRIMRTS+A GL  R Q
Sbjct:  220 SAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQRYQ 268          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 9.685e-15
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQ 149
            +++Y LTYED++GDWMLVGDVPW MF+ SVKRLRIMRTS+A GL  R Q
Sbjct:  220 SAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDANGLGQRYQ 268          
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.652e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 3
Query:    3 TSDYVLTYEDKEGDWMLVGDVPWGMFLGSVKRLRIMRTSEATGLAPRLQE 152
            +S+YV +YEDK+GDWMLVGDVPW MF+ S KRLRIM+ SEA GLAPR  E
Sbjct:  173 SSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAME 222          
The following BLAST results are available for this feature:
BLAST of BQ623152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
IAA12_ARATH1.395e-2178.33Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA13_ARATH3.437e-2073.33Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA11_ARATH5.136e-1684.44Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA7_ARATH5.678e-1564.91Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA27_ARATH5.678e-1567.86Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA16_ARATH5.678e-1575.51Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA30_ORYSJ7.416e-1575.51Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA10_ORYSJ9.685e-1571.43Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA10_ORYSI9.685e-1571.43Auxin-responsive protein IAA10 OS=Oryza sativa sub... [more]
IAA14_ARATH1.652e-1472.00Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00243 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00243 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623152 ID=BQ623152; Name=BQ623152; organism=Citrus sinensis; type=EST; length=487bp
GAACATCTGACTATGTGCTCACGTACGAGGACAAGGAAGGAGATTGGATG
CTTGTTGGGGATGTCCCATGGGGCATGTTTCTTGGCTCTGTTAAGAGGCT
CCGAATCATGAGGACATCTGAAGCTACTGGACTTGCTCCAAGGTTACAAG
AAAGTAATGGGAGACAAAGAAACAGGCCCATCTAGCCTGTTTTCTCTTAA
GCATGATAAAAACATACTGCATCCTAAAAGGAGAAAAAGAGATACGAAAA
CAGGAAAAGCGTTTTGACTAGTAAAAATTTGCCCTCTACGGCTGTTTGTT
TGTTTTGTGGTTGCTTTATTATTTTACTATACCTATGTTCATTCTCAATA
TTGGTATCTGGCAACACTCACTATACTTTCTGGAAGCTACAAGCCTCTTA
GTATACAATATATAATACCTACAAGCATATACTTGAATGGACGTTGTGTT
TTAACGCTGTATATATCAGACCACTTCTATGTTTTTG
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