BQ623155

Overview
NameBQ623155
Unique NameBQ623155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623155_ssr259 microsatellite BQ623155_ssr259:259..270. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1944 contig Csv1_Contig1944:121..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.318e-52
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            ++RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK+EKQSLK+LT KLFQTI
Sbjct:  116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTI 196          

HSP 2 Score: 103.99 bits (258), Expect = 1.318e-52
Identity = 64/114 (56.14%), Postives = 78/114 (68.42%), Query Frame = 2
Query:    2 MAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            MAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK
Sbjct:    8 MAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALK 116          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.428e-52
Identity = 67/110 (60.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 MAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP 331
            MAGLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP
Sbjct:    8 MAGLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLP 115          

HSP 2 Score: 106.301 bits (264), Expect = 8.428e-52
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            ++RF++QPL P            +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I
Sbjct:  118 KDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSI 198          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 2.345e-45
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            ++RF++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPKDEK+SLK+LT KLF TI
Sbjct:  110 KDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTI 190          

HSP 2 Score: 87.8113 bits (216), Expect = 2.345e-45
Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 2
Query:    2 MAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKV-XXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            M GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK
Sbjct:    4 MGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALK 110          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.179e-37
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLK-NLTGKLFQTI 578
            +ERF+IQPLSP           K+I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK++KQSLK +  GKLFQ I
Sbjct:  116 KERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDI 197          

HSP 2 Score: 87.0409 bits (214), Expect = 1.179e-37
Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 2
Query:   29 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLK
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLK 116          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.400e-37
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            RERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI
Sbjct:  103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATI 183          

HSP 2 Score: 67.3958 bits (163), Expect = 3.400e-37
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 MAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            MA + G S      +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+
Sbjct:    5 MASMTGLS------QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.400e-37
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            RERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI
Sbjct:  103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATI 183          

HSP 2 Score: 67.3958 bits (163), Expect = 3.400e-37
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 MAGLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            MA + G S      +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+
Sbjct:    5 MASMTGLS------QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.338e-35
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            +ERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI
Sbjct:  103 KERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTI 183          

HSP 2 Score: 53.9138 bits (128), Expect = 2.338e-35
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:   23 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            + + A + G SQ   P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLK
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLK 103          
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.275e-29
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 3
Query:  336 RERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTI 578
            +ERF++QPL P           +DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI
Sbjct:   99 KERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTI 179          

HSP 2 Score: 34.6538 bits (78), Expect = 1.275e-29
Identity = 30/106 (28.30%), Postives = 46/106 (43.40%), Query Frame = 2
Query:   23 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLK 337
            + + A + G SQ   P   ++ + + V V R+  +    + +  P   R      + A  +S    QAV A+    IK+            TLNSD+ RD DLPLK
Sbjct:    2 AQAMASMTGLSQGVCPAAADSRTRTAVVVVRA--SAEGDRCAGGPRCDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLK 99          
The following BLAST results are available for this feature:
BLAST of BQ623155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH1.318e-5272.84Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL8.428e-5260.91Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_ARATH2.345e-4567.90Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI1.179e-3758.54Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ3.400e-3761.73Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI3.400e-3761.73Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE2.338e-3566.67Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE1.275e-2966.67Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00246 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00246 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623155 ID=BQ623155; Name=BQ623155; organism=Citrus sinensis; type=EST; length=580bp
AATGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTA
GCTCCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGA
GTTGCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAA
CGAGCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTG
TGGCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATC
AAAGTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAA
CTCTGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGGAGAGGTTCTTC
ATCCAACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAGGCGTCAGC
AAAGGATATTCTTAATGTCAAGGAATTAATAGACAAGAAGGCCTGGCCCT
ATGTTCAGAATGATCTCCGTCTCAGGGCCTCATACCTTCGCTATGACCTC
AACACTATCATTTCTGCTAAGCCCAAAGATGAGAAACAATCCCTCAAGAA
CCTCACTGGAAAGCTCTTCCAGACCATTCG
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