BQ623158

Overview
NameBQ623158
Unique NameBQ623158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 42/84 (50.00%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            GA  +G + + K N+ RR L+ E + AR A++P+LQAE+D R ++  ++ LE EA VMKDVPGWKVGE+V+++ RW+ P  GEL
Sbjct:   41 GALLFGYWSMMKWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124          
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            G   YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   41 GTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            G   YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   41 GTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.060e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            G   YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   41 GTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124          
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            G   YG + + K N+ RR L+ E + AR A++P+ QAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GEL
Sbjct:   60 GTLVYGHWSIMKWNRERRRLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 143          
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.862e-16
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            G   YG + + K N+ RR L+ E + AR A+LP+LQAE D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+ P  GEL
Sbjct:   41 GTLIYGHWSMMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVAPLIGEL 124          
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Match: NDUAD_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.800e-15
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 GAFSYGMYQVGKGNKIRRALKEEKYAARRAILPMLQAEEDERFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPASGEL 261
            GA  +G +++ + N+ RR L  E   AR A++P+ QAE+D R ++  ++ LE EA +MKDVP WKVGE+V+++ RW+PP  GE+
Sbjct:   41 GALIFGYWRMMRWNQERRRLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEM 124          
The following BLAST results are available for this feature:
BLAST of BQ623158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUAD_BOVIN1.822e-1750.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PANTR4.060e-1750.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_HUMAN4.060e-1750.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_GORGO4.060e-1750.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MACFA2.015e-1647.62NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PONPY5.862e-1648.81NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MOUSE3.800e-1545.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00249 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623158 ID=BQ623158; Name=BQ623158; organism=Citrus sinensis; type=EST; length=575bp
GCAGCCTTTGGTGCTTTCTCTTATGGCATGTATCAGGTTGGCAAAGGCAA
CAAGATCCGCAGGGCTCTTAAAGAAGAAAAGTATGCCGCACGCAGGGCAA
TATTGCCTATGCTCCAAGCTGAAGAAGATGAAAGATTTGTCAAAGAGTGG
AAGAAGTATCTCGAGTATGAAGCTGAAGTAATGAAGGATGTGCCTGGCTG
GAAAGTCGGTGAAAATGTCTACAACTCTGGGAGATGGATGCCTCCAGCAT
CTGGTGAACTTCGTCCTGAAGTCTGGTGATGGCATGCGCTTTCAACTGTT
GGCCTGATATCGATGTTCATGAAAATTTCTGGTATTTCTTGGTGTACTTT
CCTTTTATGAAATAAAATTGTATTGGAAAACTACTTTACATGTATTCAAA
ATGCAGTAGTTTTTTGTTTTGCACCCTTGGCATGATTGTCTCTCTCCGCT
TTCTCATTCAACTTAAAATTTGTGACTTGGAAGGAAGAGAAATGATATGG
CTAGATAGAGAACGGATGCCAAGGGCAGCTTTGGAACATAGTAAAGATTC
TTCAAAAAAAAAAAAAAAAAACTCA
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