BQ623161

Overview
NameBQ623161
Unique NameBQ623161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1354 contig Csv1_Contig1354:117..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.297e-44
Identity = 82/129 (63.57%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA LWKLPI+FVVENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+ AK+A++RAR+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKKY++++ + +  EL  I
Sbjct:  184 MAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKYILDNEIANIGELNEI 312          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.297e-44
Identity = 83/129 (64.34%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA LWKLPI+FVVENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+VA++A+ERAR+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKK+++++ + S  EL  I
Sbjct:  182 MAVLWKLPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERARQGQGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKHILDNQIASSDELNDI 310          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.014e-28
Identity = 57/129 (44.19%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF ++GMD  ++ +  K+A E  R    P ++E +TYR+RGHS++DP + R   E   Y  RDPIT ++K ++E++  SEA+LK I
Sbjct:  166 MAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVKTYRYRGHSMSDPAKYRSKEEVETYKERDPITEIRKIILENNYASEADLKEI 294          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.141e-28
Identity = 55/129 (42.64%), Postives = 89/129 (68.99%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++ + +K+A E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++   +EA+LKAI
Sbjct:  166 MAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYVTEADLKAI 294          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.141e-28
Identity = 61/131 (46.56%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELR--DPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP++++VENN +A+G S  RA++     ++G +FG+PG+ VDGMDV  V+  A EA+E  R G+GP ++E  TYR+RGHS++DP + R  D  +K R +  DPI  +K  L +    +E ELK I
Sbjct:  187 MAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDPAKYRSKDEVQKMR-SEHDPIEQVKARLTDKGWATEDELKQI 316          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.496e-27
Identity = 55/129 (42.64%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++   AK+A E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++   +EA+LK I
Sbjct:  166 MAALWGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYATEADLKEI 294          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 52/129 (40.31%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA+LW LPIV+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RD +  +++ ++++   +EA+LKAI
Sbjct:  166 MASLWGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVEKYKERDTLVRIREIILDNKYATEADLKAI 294          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPAT_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 63/132 (47.73%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP VF+ ENNL+ +G S  RA + P  YK+G    +PG  VDGMDVL VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R + RDPI  L+  ++ S L +  ELK I
Sbjct:  208 MAALWKLPCVFICENNLYGMGTSTERAAASPDYYKRGNF--IPGLKVDGMDVLCVREATKFAANYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKRDPIIILQDRMVNSKLATVEELKEI 336          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 51/129 (39.53%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MA+LW LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TYR+RGHS++DP + R   E A+Y  RD +  +++ ++++   +E +LKAI
Sbjct:  166 MASLWGLPVVYIIENNEYSMGTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVAKYKERDTLVRIRQIILDNKYATEEDLKAI 294          
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---ELRDPAEKARYAARDPITALKKYLIESSLTSEAELKAI 387
            MAALWKLP +F+ ENN + +G S  RA +    YK+G    +PG  VDGMD+L VRE  K A    R G+GP L+E +TYR+ GHS++DP      R+  ++ R +  DPI  LK  ++ S+L S  ELK I
Sbjct:  210 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEI 338          
The following BLAST results are available for this feature:
BLAST of BQ623161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
ODPA_PORYE2.297e-4463.57Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PORPU2.297e-4464.34Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR3.014e-2844.19Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN5.141e-2842.64Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME5.141e-2846.56Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE1.496e-2742.64Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR1.072e-2540.31Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPAT_HUMAN1.072e-2547.73Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_RICTY1.400e-2539.53Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RAT4.504e-2445.45Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00252 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00252 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623161 ID=BQ623161; Name=BQ623161; organism=Citrus sinensis; type=EST; length=390bp
ATGGCTGCATTGTGGAAGTTGCCCATTGTGTTTGTTGTGGAGAACAACTT
GTGGGCTATTGGTATGTCACATCTAAGGGCTACTTCAGATCCTCAGATTT
ATAAAAAGGGACCAGCATTTGGGATGCCAGGTTTTCACGTTGATGGGATG
GATGTTTTGAAGGTGAGGGAAGTGGCTAAAGAGGCAATTGAAAGAGCTAG
GAGAGGTGAAGGACCAACATTGGTGGAATGTGAGACGTACAGGTTTAGAG
GACACTCATTGGCTGACCCTGATGAGCTTCGTGACCCAGCGGAGAAGGCT
CGTTATGCTGCTAGAGATCCAATTACTGCTTTGAAGAAATACTTGATCGA
GAGCAGTCTAACTAGTGAAGCAGAGCTCAAGGCTATTTAA
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