BQ623198

Overview
NameBQ623198
Unique NameBQ623198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:351..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 1.517e-97
Identity = 174/179 (97.21%), Postives = 179/179 (100.00%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 6.372e-96
Identity = 170/179 (94.97%), Postives = 178/179 (99.44%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 6.372e-96
Identity = 170/179 (94.97%), Postives = 177/179 (98.88%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VAS SKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.087e-95
Identity = 170/179 (94.97%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG VASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 3.163e-95
Identity = 169/179 (94.41%), Postives = 175/179 (97.77%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 7.045e-95
Identity = 167/179 (93.30%), Postives = 178/179 (99.44%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.202e-94
Identity = 167/179 (93.30%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIG VPVGRVETGV+KPGM+VTF P+GLTTEVKSVEMHHEAL EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGIVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 5.964e-94
Identity = 168/179 (93.85%), Postives = 175/179 (97.77%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF+ YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.329e-93
Identity = 165/179 (92.18%), Postives = 176/179 (98.32%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETG +KPGMVVTFGPSGLTTEVKSVEMHHE+L EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRF 412
[Close]
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 1.735e-93
Identity = 166/179 (92.74%), Postives = 175/179 (97.77%), Query Frame = 2 
Query:    2 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRF 538
            LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF P+GLTTEVKSVEMHHE+L EA PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRF
Sbjct:  234 LRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRF 412
The following BLAST results are available for this feature:
BLAST of BQ623198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.517e-9797.21Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC6.372e-9694.97Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MAIZE6.372e-9694.97Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES1.087e-9594.97Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A2_DAUCA3.163e-9594.41Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_SOLLC7.045e-9593.30Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_VICFA1.202e-9493.30Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_WHEAT5.964e-9493.85Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A1_DAUCA1.329e-9392.18Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_SOYBN1.735e-9392.74Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00289 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00289 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623198 ID=BQ623198; Name=BQ623198; organism=Citrus sinensis; type=EST; length=603bp
CCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCG
TCCCAGTGGGTCGCGTTGAGACCGGTGTGCTCAAGCCTGGTATGGTGGTG
ACATTTGGTCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCA
CCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACG
TGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAAC
TCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGGTCAT
CATCATGAACCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTG
ACTGCCACACCTCCCACATTGCTGTCAAGTTTTCTGAGCTTGTGACCAAG
ATTGACAGGCGATCTGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAA
GAATGGAGATGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTG
TTGAGACCTTCTCCGACTACCCACCCCTTGGTCGTTTTTGCTGTTAGGGA
CATGCGTCAGACTGTAGCTGTTGGTGTGATCAAGAGTGTTGAAAAGAAGG
ATC
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