BQ623216

Overview
NameBQ623216
Unique NameBQ623216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 1.844e-62
Identity = 118/137 (86.13%), Postives = 130/137 (94.89%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRAARKL 413
            SRYASCL+YL +LK+NLLLDIHLHDHV+TLYDQIR KALIQYT PFVSVDL  MA+AFKTSV+G+EKELEALITDNQIQARIDSHNKILYARHADQRNATFQ+VLQ G+EFD+DVRAMLLRANLLKHEY+ R+ARKL
Sbjct:  305 SRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLRANLLKHEYHARSARKL 441          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_DICDI (COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum GN=csn1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.127e-35
Identity = 72/136 (52.94%), Postives = 99/136 (72.79%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRAARK 410
            ++Y SCL YL  +K  LLLDIHL+ HVE LY +IR+KAL+QY  P+ SVD+++MA+AF T+V  +EKE+  LI +N+IQARIDSHNK LYAR ADQR  TF++ +Q GS+F     ++LLR  +L +  +  + RK
Sbjct:  293 TKYGSCLKYLDKMKPILLLDIHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQARIDSHNKRLYARKADQRTTTFEKTVQVGSDFQNSSNSLLLRLEMLNNNISTVSNRK 428          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_MOUSE (COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.922e-35
Identity = 74/133 (55.64%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRA 401
            S+YASCL  L  +K NLLLD++L  HV TLY QIRN+ALIQY  P+VS D+H MA AF T+VA +E EL  LI +  I ARIDSH+KILYAR  DQR+ TF++ L  G EF +  +AM+LRA +L+++ +V++
Sbjct:  316 SKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKS 448          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_XENLA (COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 73/133 (54.89%), Postives = 99/133 (74.44%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRA 401
            S+YASCL  L  +K NLLLD++L  HV TLY QIRN+ALIQY  P+VS D++ MA AF T+V+ +E EL  LI +  I ARIDSH+KILYAR  DQR+ TF++ LQ G EF +  +AM+LRA +L+++ +V++
Sbjct:  332 SKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMGREFQRRAKAMILRAAVLRNQIHVKS 464          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_HUMAN (COP9 signalosome complex subunit 1 OS=Homo sapiens GN=GPS1 PE=1 SV=4)

HSP 1 Score: 148.288 bits (373), Expect = 2.510e-35
Identity = 73/133 (54.89%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRA 401
            S+YASCL  L  +K NLLLD++L  HV TLY QIRN+ALIQY  P+VS D+H MA AF T+VA +E EL  LI +  I AR+DSH+KILYAR  DQR+ TF++ L  G EF +  +AM+LRA +L+++ +V++
Sbjct:  336 SKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKS 468          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_RAT (COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.281e-35
Identity = 73/133 (54.89%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRA 401
            S+YASCL  L  +K NLLLD++L  HV TLY QIRN+ALIQY  P+VS D+H MA AF T+VA +E EL  +I +  I ARIDSH+KILYAR  DQR+ TF++ L  G EF +  +AM+LRA +L+++ +V++
Sbjct:  316 SKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKS 448          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_DROME (COP9 signalosome complex subunit 1b OS=Drosophila melanogaster GN=CSN1b PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.246e-34
Identity = 70/133 (52.63%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRA 401
            S+YASCL  L  ++ NLL+D+++  HV TLY +IRN+ALIQY  P++S D+H MA AF +SV  +E E+  LI D QIQARIDSHNKIL+A+ ADQRN+TF+R L  G ++ +  R ++LRA +LK   +V++
Sbjct:  365 SKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMGKQYQRHTRMLVLRAAMLKSHIHVKS 497          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_NEUCR (COP9 signalosome complex subunit 1 OS=Neurospora crassa GN=csn-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.921e-15
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 3
Query:    6 RYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVRAARK 410
            RYA+C++ L + + + LLDI+L  HV  LY  IR K+++QY  PF  V L  M  AF      IE EL  +I D ++ ARID+ NK               + LQT   +++     + R N++  +  V+ +RK
Sbjct:  285 RYAACIEILESYRPDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIEDELFTMIKDGKLNARIDAINK--------------SKALQTLENYEKQALDRIRRMNIMAADLEVKGSRK 405          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_EMENI (COP9 signalosome complex subunit 1 OS=Emericella nidulans GN=csnA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 3
Query:    3 SRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAF-----------KTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDQDVRAMLLRANLLKHEYNVR 398
            S++  CL+ L   +A+ LLDIHL  HV+ LY++IR K++ QY  PF  V L  MA  F             S +   +EL +LI D  + ARID    +L +   D+R    + VL +   + ++    LLR+N+++    VR
Sbjct:  324 SKFRPCLEILEAYRADYLLDIHLQRHVQVLYNRIRTKSIQQYLIPFNRVSLESMAKIFVLGNPTSQSSQSDSKSAFVQELISLIQDGTLDARIDLEKHVLVSTQGDKRIEVQEAVLDSLDNYVREAHLRLLRSNIIRAGLEVR 466          
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Match: CSN1_BRAOL (COP9 signalosome complex subunit 1 (Fragment) OS=Brassica oleracea GN=CSN1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.935e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3
Query:  204 ELEAL-ITDNQIQARIDSHNKILYARHADQRNATFQR 311
            ELEAL ITDNQIQARIDSHNKILYARHADQRNATFQ+
Sbjct:    1 ELEALLITDNQIQARIDSHNKILYARHADQRNATFQK 37          
The following BLAST results are available for this feature:
BLAST of BQ623216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CSN1_ARATH1.844e-6286.13COP9 signalosome complex subunit 1 OS=Arabidopsis ... [more]
CSN1_DICDI1.127e-3552.94COP9 signalosome complex subunit 1 OS=Dictyosteliu... [more]
CSN1_MOUSE1.922e-3555.64COP9 signalosome complex subunit 1 OS=Mus musculus... [more]
CSN1_XENLA2.510e-3554.89COP9 signalosome complex subunit 1 OS=Xenopus laev... [more]
CSN1_HUMAN2.510e-3554.89COP9 signalosome complex subunit 1 OS=Homo sapiens... [more]
CSN1_RAT4.281e-3554.89COP9 signalosome complex subunit 1 OS=Rattus norve... [more]
CSN1_DROME1.246e-3452.63COP9 signalosome complex subunit 1b OS=Drosophila ... [more]
CSN1_NEUCR4.921e-1534.07COP9 signalosome complex subunit 1 OS=Neurospora c... [more]
CSN1_EMENI6.427e-1533.57COP9 signalosome complex subunit 1 OS=Emericella n... [more]
CSN1_BRAOL1.935e-1194.59COP9 signalosome complex subunit 1 (Fragment) OS=B... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00307 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00307 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623216 ID=BQ623216; Name=BQ623216; organism=Citrus sinensis; type=EST; length=569bp
GCAGCCGTTATGCATCATGTCTGGATTACCTTGGAAATCTTAAGGCAAAC
CTGTTGCTTGATATCCATTTGCACGACCATGTTGAGACGTTGTATGATCA
AATACGTAACAAAGCCCTCATCCAGTATACACACCCATTTGTGTCTGTTG
ATTTGCACATGATGGCAAATGCTTTCAAAACAAGTGTTGCTGGGATAGAG
AAAGAGCTTGAAGCCTTGATTACTGACAACCAAATACAGGCTCGGATTGA
CTCACACAACAAGATTTTGTATGCACGACATGCGGATCAAAGAAATGCAA
CTTTCCAACGGGTTTTACAGACTGGCAGTGAATTTGATCAGGATGTGAGG
GCAATGTTACTGAGGGCAAATCTTCTGAAGCATGAATACAATGTTAGGGC
TGCTAGGAAACTTTGAATAGGTAGATCTGCTTGCTTAGATTCAATTTTAC
CTGCCGTTGTCTACTACTATTATTGAAGAAGAAGGGTTCTACCGTTATTT
TGAAAGAAGATTGGTTGTCCATGGTTGATGGAATTTTGTGCATTTCAGAG
TACATTGTGGTGATAATTG
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