BQ623226

Overview
NameBQ623226
Unique NameBQ623226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.065e-33
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +EDLK+WD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:   91 DEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.877e-31
Identity = 63/81 (77.78%), Postives = 69/81 (85.19%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            ++DLK+WD DF+K+DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:   80 DDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.240e-28
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   72 EEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.991e-27
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   68 EEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   72 EEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.093e-25
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   71 EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 310
            +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct:   83 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of BQ623226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
SKP1B_ARATH7.065e-3381.48SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH3.877e-3177.78SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK11_ARATH5.240e-2871.60SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.991e-2770.37SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA1.093e-2568.75S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT1.093e-2568.75S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB1.093e-2568.75S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE1.093e-2568.75S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA1.093e-2568.75S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN1.093e-2568.75S-phase kinase-associated protein 1 OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00317 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00317 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623226 ID=BQ623226; Name=BQ623226; organism=Citrus sinensis; type=EST; length=581bp
GTTCCTGCGACCCAGGATAGCAACAACAGCGGCGCCAACAGCAACGGTAC
TGCCACCTAACGGTGGTGAGGAGGATCTCAAAAGCTGGGACACTGACTTC
GTCAAAGTTGACCAGGCCACTCTCTTCGATCTCATCCTGGCAGCAAACTA
CCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGACA
TGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAAG
AATGACTTCACTCCAGAGGAGGAAGAAGAGGTCCGTAGGGAGAACCAGTG
GGCTTTTGAGTGAAAGTTGTTTCAACAAAGACAATTTTTCATTATCATTG
TCTTGCAATCTTGCTGTCTTTAACATGTAGATGTAGTTTTCTAGGGCTTA
TCTTTTCCTTTCTCATTGTACTTTCGAACTTATTAGCTGTTTGAAATGTA
AATAATAGTCTGTTCTGGTGGAACTGGTAGCAGTTGGTCTGGTCCATCCT
TTCCTGCTTGCTATCAAGACCGGTGGATCATTGAATTTGACTAATTCTTT
TGGTTCCAAACAAAAGAAAAAAAAAAAAAAA
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