BQ623227

Overview
NameBQ623227
Unique NameBQ623227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig332 contig Csv1_Contig332:488..1092. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.762e-45
Identity = 88/177 (49.72%), Postives = 122/177 (68.93%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW  ++ V
Sbjct:  129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 6.762e-45
Identity = 88/177 (49.72%), Postives = 122/177 (68.93%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW  ++ V
Sbjct:  129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.569e-44
Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V +WT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW  ++ V
Sbjct:  129 ISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 4.383e-44
Identity = 87/177 (49.15%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + +++  SGGCDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT      + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDGQW  ++ V
Sbjct:  129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.784e-37
Identity = 77/164 (46.95%), Postives = 105/164 (64.02%), Query Frame = 3
Query:   36 WDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG---FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            W+  +  Q   +GV SVSW+P+  P +LV S       P++++ +G CDN +K++K     W +D    L+ H DWVRDVAWAPN+GLP S IAS S+D  VI+WT    G  W GK L  F   V+RVSWS+ GNILAV+ G+N VTLW+E VD +W+ ++ V
Sbjct:  138 WEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHV 298          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.413e-34
Identity = 78/195 (40.00%), Postives = 110/195 (56.41%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGS------------GFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-------------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVT 512
            +SV T   DG W    +  AHPVG  +VSWAP+  PG+L+ +            G    V++  S GCDNTVK+W+      +     ALQ H+DWVRDVA+APN+GLP+S +A+AS+D  V+IWT       W    L             + F   V+RVSWS++GN+LAV+ G+  +TLW+E + G W+ V+
Sbjct:  167 VSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVS 360          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.754e-33
Identity = 82/178 (46.07%), Postives = 111/178 (62.36%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV---QKLCSGGCDNTVKVWKL--YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            +SV   + +  W+ S I  AH +GV SVSWAP+T PG++V S         ++  +GG DN +K+W      G +K++  P L  HTDWVRDVAW+P + L KS IASASED  V IWT       QW  KVL  F   V+RVSWSL+GN+LA + G+N VTLW+E + G+W+ V ++
Sbjct:  115 VSVLEFKDNNSWEHS-IFHAHGLGVNSVSWAPATNPGSIVSSKPSPKSTGNRRFVTGGSDNALKIWAFDAATGAYKLEREP-LTGHTDWVRDVAWSPTV-LQKSYIASASEDRTVRIWTSDPANPQQWNCKVL-GFDAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVKSI 288          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.323e-32
Identity = 77/171 (45.03%), Postives = 110/171 (64.33%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG-FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 509
            +SV   R D  W T +I  AH +GV S+SWAP+ +PG+LV S   +   ++  +GG DN +K+W         +    L+ H+DWVRDVAW+P++ L KS IASAS+D  V +WT  A    QW  +VL +F   ++RVSWS +GNILAV+ G+N V+LW+E + GQW++V
Sbjct:  138 VSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIGQQRRFVTGGSDNLLKIWDYNPETKTYNATQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRVWTADASNPGQWTSQVL-EFDNVLWRVSWSPSGNILAVSGGDNKVSLWKENLRGQWEKV 304          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.728e-32
Identity = 74/157 (47.13%), Postives = 100/157 (63.69%), Query Frame = 3
Query:   60 AHPVGVTSVSWAPSTAPGALVGSGFLDPVQK-LCSGGCDNTVKVWKLYNGIWKMDCFPA--LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQVTAV 518
            AH  GV SVSWAPSTAPG+++ +      Q+   +GG DNT+K+W       +  C     L  HTDWV DV W+P + L KS IASAS+D  V IWT  +     W+ +VL +F T V+RVSWSL+GN+LAV+ G+N VTLW+E + G+W  V ++
Sbjct:  139 AHGQGVNSVSWAPSTAPGSIISTNATPAAQRRFVTGGSDNTLKIWSWDAASAQYRCEEGGVLSGHTDWVLDVDWSPTV-LQKSYIASASQDRTVRIWTSDSSNPGVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEWACVNSL 294          
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Match: SEC13_ASPCL (Protein transport protein sec13 OS=Aspergillus clavatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 3
Query:    3 ISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQK-LCSGGCDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGQWQQV 509
            +SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S      Q+   +GG DN +K+W         +    L+ H+DWVRDVAW+P++ L KS IASAS+D  V IWT  A    QW  + L +F T ++RVSWS +GNILAV+ G+N V+LW+E + GQW++V
Sbjct:  124 VSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSNPGPGQQRRFVTGGSDNLLKIWDYNPESKTYNITQTLEGHSDWVRDVAWSPSI-LSKSYIASASQDKTVRIWTSDASNPGQWTSQQL-EFDTVLWRVSWSPSGNILAVSGGDNKVSLWKENLKGQWEKV 290          
The following BLAST results are available for this feature:
BLAST of BQ623227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_RAT6.762e-4549.72Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE6.762e-4549.72Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_BOVIN2.569e-4449.72Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_HUMAN4.383e-4449.15Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI1.784e-3746.95Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA1.413e-3440.00Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_CHAGB7.754e-3346.07Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_EMENI1.323e-3245.03Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_MAGGR1.728e-3247.13Protein transport protein SEC13 OS=Magnaporthe gri... [more]
SEC13_ASPCL5.026e-3246.20Protein transport protein sec13 OS=Aspergillus cla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00318 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623227 ID=BQ623227; Name=BQ623227; organism=Citrus sinensis; type=EST; length=605bp
ACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGATACATCTCGG
ATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCATGGGCCCCATC
AACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGACCCAGTTCAGA
AGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTGGAAGCTGTAC
AATGGAATTTGGAAGATGGACTGCTTTCCAGCTCTTCAAATGCATACTGA
TTGGGTTAGAGATGTTGCTTGGGCTCCCAACTTGGGGCTTCCAAAATCTA
CTATTGCAAGTGCATCGGAGGATGGGAAAGTTATTATATGGACTGTGGCC
AGGGAAGGAGATCAATGGGAAGGTAAGGTGTTGCATGACTTCAAGACCCC
TGTTTATAGAGTCAGCTGGTCACTGACTGGAAACATATTGGCTGTGGCTG
ATGGAAACAACAATGTAACACTGTGGGAAGAAGCAGTGGATGGGCAGTGG
CAACAGGTGACTGCAGTTGGGCCGTAAGACTCTTTTAAGTTTTTCAATTT
ATTATCATGAAATACAAGATTGCATTTTAGAACCTCTTAAAAAAAAAAAA
AAAAA
back to top