BQ623233

Overview
NameBQ623233
Unique NameBQ623233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMYA_VIGMU (Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.046e-53
Identity = 94/128 (73.44%), Postives = 111/128 (86.72%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWE 385
            IG+ P+NAVTFIDNHDTGSTQRLWPFPSDKVM GYAYILTHPGTP IFYDHFFDWGLKE I+KL+++R RNGIN  S V I+AS+ D+Y+A I +++++KIGPKMD+GNLIPS+  VA  G DYAVWE
Sbjct:  294 IGVKPENAVTFIDNHDTGSTQRLWPFPSDKVMQGYAYILTHPGTPSIFYDHFFDWGLKEQIAKLSSIRLRNGINEKSTVKIMASEGDLYVAKIDNKIMVKIGPKMDLGNLIPSNLHVATSGQDYAVWE 421          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3C_ORYSJ (Alpha-amylase isozyme 3C OS=Oryza sativa subsp. japonica GN=AMY1.7 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 3.366e-52
Identity = 94/130 (72.31%), Postives = 107/130 (82.31%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 391
            IG LP+ AVTFIDNHDTGSTQ  WPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ IS LAAVR+RNGI+  S++NILA+D DVY+A I D+VI KIG + D+GNLIPSDF V A G +Y VWEK+
Sbjct:  298 IGWLPEKAVTFIDNHDTGSTQNSWPFPSDKVMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAAVRSRNGIHPGSKLNILAADGDVYVAMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCVWEKS 427          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3A_ORYSJ (Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 3.366e-52
Identity = 87/130 (66.92%), Postives = 109/130 (83.85%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 391
            IG  P+ AVTF+DNHDTGSTQR+WPFPSDKV+LGYAYILTHPG PCIFYDH FDW LK+ I+ LAA R RNGIN  S++ +LA+++D+Y+A + +RVI KIGP++D+GN+IPSDF + A G DY VWEK+
Sbjct:  300 IGWYPEKAVTFVDNHDTGSTQRMWPFPSDKVILGYAYILTHPGVPCIFYDHVFDWNLKQEINALAATRKRNGINAGSKLRVLAAESDMYVAMVDERVITKIGPRIDVGNIIPSDFHIVAHGNDYCVWEKS 429          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY2_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 2.182e-51
Identity = 89/129 (68.99%), Postives = 107/129 (82.95%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG  P  AVTF+DNHDTGSTQ +WPFPSD+VM GYAYILTHPGTPCIFYDHFFDWGLKE I +L +VR R+GI+  S++ I+ +DAD+Y+A I  +VI+K+GP+ D+GNLIP  FKVAA G DYAVWEK
Sbjct:  298 IGWWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFKVAAHGNDYAVWEK 426          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3B_ORYSJ (Alpha-amylase isozyme 3B OS=Oryza sativa subsp. japonica GN=AMY1.6 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.374e-50
Identity = 90/130 (69.23%), Postives = 105/130 (80.77%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 391
            IG LP+ AVTFIDNHDTGSTQ  WPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ IS LAAVR+RN I+  S++ ILA++ DVY+A I D+VI KIG + D+GNLIPSDF V A G +Y +WEK+
Sbjct:  298 IGWLPEKAVTFIDNHDTGSTQNSWPFPSDKVMQGYAYILTHPGVPCIFYDHVFDWNLKQEISTLAAVRSRNEIHPGSKLKILAAEGDVYVAMIDDKVITKIGTRYDVGNLIPSDFHVVAHGNNYCIWEKS 427          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY3D_ORYSJ (Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 9.167e-50
Identity = 84/129 (65.12%), Postives = 104/129 (80.62%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG LP+ AVTF+DNHDTGSTQ+LWPFPSDKVM GYAYILTHPG PCIFYDH FDW LK+ I+ LAA+R RNGIN  S++ I+ +DAD Y+A + ++V++KIG + D+GN +PSDF     G DY+VWEK
Sbjct:  297 IGWLPEKAVTFVDNHDTGSTQKLWPFPSDKVMQGYAYILTHPGVPCIFYDHMFDWNLKQEITALAAIRERNGINAGSKLRIVVADADAYVAVVDEKVMVKIGTRYDVGNAVPSDFHQTVHGKDYSVWEK 425          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY6_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.564e-49
Identity = 85/129 (65.89%), Postives = 105/129 (81.40%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG  P  AVTF+DNHDTGSTQ +WPFPSD+VM GYAYILTHPG PCIFYDHFFDWGLKE I +L ++R R GI++ S++ I+ +DAD+Y+A I  +VI+K+GP+ D+G+LIP  FKV A G DYAVWEK
Sbjct:  300 IGWWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIDRLVSIRTRQGIHSESKLQIMEADADLYLAEIEGKVIVKLGPRYDVGHLIPEGFKVVAHGNDYAVWEK 428          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY4_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.258e-48
Identity = 85/129 (65.89%), Postives = 104/129 (80.62%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG  P  AVTF+DNHDTGSTQ +WPFPSD+VM GYAYILTHP TPCIFYDHFFDWG KE I +L +VR R+GI+  S++ I+ +DAD+Y+A I  +VI+K+GP+ D+GNLIP  F+ AA G DYAVWEK
Sbjct:   24 IGWWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPRTPCIFYDHFFDWGPKEEIDRLVSVRTRHGIHNESKLQIIEADADLYLAEIDGKVIVKLGPRYDVGNLIPGGFEGAAHGNDYAVWEK 152          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY2A_ORYSI (Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 8.580e-48
Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEKN 391
            IG  P  AVTF+DNHDTGSTQ++WPFPSDKVM GYAYILTHPG PCIFYDHFFDWGLKE I+ L AVR RNG+   S + I+  DAD Y+A I  +V+MKIG + D+ +LIP  F +AA G  YAVWEK+
Sbjct:  299 IGWWPAKAVTFVDNHDTGSTQQMWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEQIAALVAVRQRNGVTATSSLKIMLHDADAYVAEIDGKVVMKIGSRYDVSSLIPPGFHLAAHGNGYAVWEKS 428          
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Match: AMY1_ORYSJ (Alpha-amylase OS=Oryza sativa subsp. japonica GN=AMY1.1 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 8.580e-48
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 2
Query:    2 IGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 388
            IG  P  A TF+DNHDTGSTQ LWPFPSDKVM GYAYILTHPG PCIFYDHFFDWGLKE I +L ++RNR GI+ AS + I+ +D+D+Y+A I  +VI KIGP+ D+ +LIP  F+V A G  YA+WEK
Sbjct:  305 IGWWPAKATTFVDNHDTGSTQHLWPFPSDKVMQGYAYILTHPGNPCIFYDHFFDWGLKEEIERLVSIRNRQGIHPASELRIMEADSDLYLAEIDGKVITKIGPRYDVEHLIPEGFQVVAHGDGYAIWEK 433          
The following BLAST results are available for this feature:
BLAST of BQ623233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AMYA_VIGMU1.046e-5373.44Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1[more]
AMY3C_ORYSJ3.366e-5272.31Alpha-amylase isozyme 3C OS=Oryza sativa subsp. ja... [more]
AMY3A_ORYSJ3.366e-5266.92Alpha-amylase isozyme 3A OS=Oryza sativa subsp. ja... [more]
AMY2_HORVU2.182e-5168.99Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY3B_ORYSJ5.374e-5069.23Alpha-amylase isozyme 3B OS=Oryza sativa subsp. ja... [more]
AMY3D_ORYSJ9.167e-5065.12Alpha-amylase isozyme 3D OS=Oryza sativa subsp. ja... [more]
AMY6_HORVU1.564e-4965.89Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY4_HORVU2.258e-4865.89Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY2A_ORYSI8.580e-4865.38Alpha-amylase isozyme 2A OS=Oryza sativa subsp. in... [more]
AMY1_ORYSJ8.580e-4865.12Alpha-amylase OS=Oryza sativa subsp. japonica GN=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00324 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00324 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623233 ID=BQ623233; Name=BQ623233; organism=Citrus sinensis; type=EST; length=540bp
CATTGGAATTTTACCACAAAATGCTGTGACTTTTATTGACAATCATGACA
CAGGGTCCACTCAACGTCTGTGGCCATTCCCATCGGATAAAGTCATGCTT
GGATATGCTTACATCCTCACACATCCCGGCACCCCTTGCATATTTTATGA
TCACTTCTTTGACTGGGGTCTGAAGGAGGCGATTAGCAAATTGGCTGCTG
TCAGAAATAGGAATGGGATCAATACAGCAAGCAGAGTTAATATTTTAGCC
TCAGATGCCGATGTCTACATTGCTGCAATTGGTGATAGAGTCATTATGAA
GATTGGACCAAAGATGGATATTGGAAATCTTATTCCTTCTGACTTCAAAG
TGGCTGCCGATGGAACCGACTATGCTGTCTGGGAAAAAAACTGAACTCAA
TGAAGATTTTATTTTCAAGTTATTAGAATAATAATGTTCTGAAAGGCTAT
TGTTTAACACGTAAAAGAGCTCTTGTGAGAATAAAATGCAAATATTCTGT
ATTTATGTAAACATATCTCTCACTAAAATAGTTATTTGAA
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