BQ623257

Overview
NameBQ623257
Unique NameBQ623257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623257_ssr417 microsatellite BQ623257_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:374..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.694e-32
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 1
Query:    1 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            VSWELFDEQS  YKESVLP++V+ARVSIEAGSTFGW KIVGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct:  440 VSWELFDEQSKEYKESVLPSSVTARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 66/80 (82.50%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 240
            VSWELF++QSD YKESVLP+ V+ARVSIEAGSTFGW KIVGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct:  662 VSWELFEKQSDEYKESVLPSDVTARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            V WEL+DEQS  YKESVLP++V+ARVSIEAGSTFGW+K VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct:  662 VCWELYDEQSAEYKESVLPSSVTARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTC_MAIZE (Transketolase, chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            VSWELFDEQSD YKESVLPAAV+AR+SIEAGST GW+K VG++GKAIGID+FGASAPAG IYKE+GIT E++I AAK
Sbjct:  597 VSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 673          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.289e-29
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 240
            V WELF EQS+ Y+E+VLP+ V+ARVS+EAGSTFGWE+ +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AAKE+C
Sbjct:  597 VCWELFAEQSEKYRETVLPSGVTARVSVEAGSTFGWERFIGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAAKEIC 676          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.136e-28
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 VSWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 240
            VSWELF EQS  YKE VLP+ V+ARVS+EAGSTFGWE+ VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAKE+C
Sbjct:  600 VSWELFGEQSKEYKEMVLPSEVTARVSVEAGSTFGWERFVGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAKELC 679          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_ANASP (Transketolase OS=Anabaena sp. (strain PCC 7120) GN=tkt PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.805e-19
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 237
            +W+LFD Q  AYKESVLP AV+ R+++EA S+FGW K +GS+G A+ IDRFGASAP G   ++FG + + V+  AK++
Sbjct:  591 AWDLFDAQDAAYKESVLPKAVTKRLAVEAASSFGWHKYIGSEGDAVTIDRFGASAPGGVCLEKFGFSVDNVLAKAKQL 668          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_BACHD (Transketolase OS=Bacillus halodurans GN=tkt PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAK 231
            SW+ F+ QS  YKE VLP+ V+AR++IE GS+ GW K VG++G  + IDRFGASAP  +I +EFG T + V+  AK
Sbjct:  585 SWDRFEAQSAEYKEEVLPSDVTARLAIEMGSSLGWAKYVGNQGDVVAIDRFGASAPGERIMEEFGFTVQHVVARAK 660          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STRP8 (Transketolase OS=Streptococcus pyogenes serotype M18 GN=tkt PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.637e-17
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 204
            S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  652 SQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Match: TKT_STRP6 (Transketolase OS=Streptococcus pyogenes serotype M6 GN=tkt PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.637e-17
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    4 SWELFDEQSDAYKESVLPAAVSARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEFGIT 204
            S  +FDEQS  YKES+LPAAV+ R++IEAGS+FGW K VG  GK + ID +GASAP  +I++E+G T
Sbjct:  652 SQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPGNRIFEEYGFT 718          
The following BLAST results are available for this feature:
BLAST of BQ623257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TKTC_CRAPL1.694e-3286.08Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKTC_SPIOL2.889e-3282.50Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKTC_SOLTU2.704e-3081.01Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKTC_MAIZE2.704e-3080.52Transketolase, chloroplastic OS=Zea mays PE=1 SV=1[more]
TKT7_CRAPL2.289e-2971.25Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTA_CRAPL1.136e-2873.75Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
TKT_ANASP2.805e-1953.85Transketolase OS=Anabaena sp. (strain PCC 7120) GN... [more]
TKT_BACHD9.022e-1853.95Transketolase OS=Bacillus halodurans GN=tkt PE=3 S... [more]
TKT_STRP87.637e-1759.70Transketolase OS=Streptococcus pyogenes serotype M... [more]
TKT_STRP67.637e-1759.70Transketolase OS=Streptococcus pyogenes serotype M... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00348 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00348 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623257 ID=BQ623257; Name=BQ623257; organism=Citrus sinensis; type=EST; length=529bp
GTTTCTTGGGAGCTTTTTGATGAGCAATCAGATGCCTACAAGGAAAGTGT
GCTTCCGGCTGCTGTCTCAGCTAGAGTTAGCATTGAAGCTGGATCTACAT
TTGGGTGGGAGAAGATTGTTGGAAGCAAAGGAAAGGCCATCGGCATTGAC
CGATTCGGTGCTAGTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTAT
CACCGCGGAGGCTGTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGT
TAGTCAAAAACTTCTTATTATTCCATATGCATTTGGGAATTGGTGATTAC
AGTGAAGAGACCATTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTT
TTAATAAAAGCAAGATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCA
GAGCATCGTAGATTGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTC
ATGTTCATGAATTTGTATCAAACTCTTGGACCTATCTTGAGATTTGTAAT
GTTTCCTGTTGATTTTGATGCAAATTTGC
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