BQ623275

Overview
NameBQ623275
Unique NameBQ623275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:263..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 443
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+                     N +   ++      P  M+DF+ A ++V  SVS+      E  +W E +G
Sbjct:  355 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS----LMAMRRRIEGLTPEEIRNLSRDDMH-----MPTTMEDFEMALKKVSKSVSASDIEKYE--KWIEEFG 490          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +V+ ATNRP D+D A++RR+P    V LP+A  RE+I+R+IL+ E L++ ++L+ IA+ ++GYSGSDLK LC  AA
Sbjct:  235 MVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAA 310          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  354 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  354 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.237e-15
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DVDL  IA   +GYSG+D+ N+C  A+
Sbjct:  355 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDAS 430          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.227e-15
Identity = 39/76 (51.32%), Postives = 57/76 (75.00%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV++E IA   DGYSG+D+ N+C  A+
Sbjct:  351 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 426          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP+   RE+++R+ L +  LA D+DL+ IA   DGYSG+D+ N+C  A+
Sbjct:  379 MVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDAS 454          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 49/147 (33.33%), Postives = 84/147 (57.14%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 443
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++R+ L + ELA+DVD+  IA  ++GYSG+D+ N+C  A+                     N +   ++      P  M+DF+ + ++V  SVS  ++++ +  +W E +G
Sbjct:  349 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS----LMAMRRRIEGLTPEEIRNISRAEMH-----MPTTMEDFESSLKKVSKSVS--ASDLEKYEKWIEEFG 484          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  354 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_MOUSE (Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 38/76 (50.00%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  RE+++R+ L + ELA DV+L  IA   +GYSG+D+ N+C  A+
Sbjct:  354 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDAS 429          
The following BLAST results are available for this feature:
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
KTNA1_XENTR6.522e-1636.05Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
ATD1A_DANRE1.453e-1551.32ATPase family AAA domain-containing protein 1-A OS... [more]
KTNA1_MACFA3.237e-1551.32Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN3.237e-1551.32Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_CHICK3.237e-1551.32Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KTNA1_XENLA4.227e-1551.32Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_STRPU7.211e-1548.68Katanin p60 ATPase-containing subunit OS=Strongylo... [more]
KTNA1_SALSA1.230e-1433.33Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_RAT1.230e-1450.00Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MOUSE1.230e-1450.00Katanin p60 ATPase-containing subunit A1 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623275 ID=BQ623275; Name=BQ623275; organism=Citrus sinensis; type=EST; length=602bp
TTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCTTGATGAGGCTGTT
GTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGCCAGATGCCCCAAA
CAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAAGAATTGGCATCTG
ATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGGGTACTCTGGAAGT
GATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTCCCATACGAGAAAT
TTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAG
CTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCCTCTGAAGATGGAC
GATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTC
TACAAATATGAATGAGCTCCTTCAATGGAATGAACTATATGGAGAAGGGT
GGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTAGAAGGTGGTATC
TCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTATCATCCTAAAT
GATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCTGTTGGGGCTGT
CC
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