BQ623289

Overview
NameBQ623289
Unique NameBQ623289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1521 contig Csv1_Contig1521:175..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623289 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.155e-12
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 3 
Query:   96 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYD 212
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 27.335 bits (59), Expect = 1.155e-12
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 2 
Query:  299 LYSGETRSKHH 331
            +YSGETRSKHH
Sbjct:  100 MYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of BQ623289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.155e-1274.36Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00380 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00380 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623289 ID=BQ623289; Name=BQ623289; organism=Citrus sinensis; type=EST; length=634bp
AGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCA
GGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAA
GGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTA
GGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCC
ACTGTTTATGACTGCAACCAAATAAAGGCTAAGAGGAAGGAGGAAAACGT
GGCACTCTGTCTCATGGGCGCGTTGAAATAGATCTTTGTCTTATTCAGCT
TTACAGTGGGGAGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGC
TCCAGCGATGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTG
CCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCC
TTGTCGTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGT
TTGGTTTTAAAATGCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTT
TTATATCATATAATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTG
TGGGCGGAGATGAAAGGTTGCTGGTTTTTGGGTT
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