BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCAP_ARATH (Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.255e-55
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 1
Query:  148 EELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAAEM 492
            E LKPAI L+ENALKHL+KMRSER EDLCLRIGVKQGGCSGMSYTM+FENRANARPDDS IEY GF IVCDPKS+LFLFGMQLDYSDALIGGGF F NPNATQTCGCGKSFAAEM
Sbjct:   66 EGLKPAISLSENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEYQGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSFAAEM 180          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: Y1417_SYNY3 (Uncharacterized protein slr1417 OS=Synechocystis sp. (strain PCC 6803) GN=slr1417 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.482e-35
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            I L++ ALKHL  ++ ++ +DLCLR+GV+QGGCSGMSY M+FE    A   D V +Y+GF I+CD KSLL+L+G+ LDYS+ALIGGGF F NPNA QTCGCGKSF
Sbjct:   12 IQLSDAALKHLLALKEQQGKDLCLRVGVRQGGCSGMSYMMDFEEPNRATEHDEVFDYEGFQIICDRKSLLYLYGLMLDYSNALIGGGFQFTNPNANQTCGCGKSF 116          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: YCF83_PORPU (Uncharacterized protein ycf83 OS=Porphyra purpurea GN=ycf83 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.008e-33
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  148 EELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            EE    I LTE A + +  ++S    ++CLRIGVKQGGCSGMSY+M FE+ ++ R  D V+  D F++ CDPKSLL+L+G+ LDYS  LIGGGF F NPNA+QTCGCGKSF+
Sbjct:    2 EENMNFITLTEPAARQIKILKSNFDNEVCLRIGVKQGGCSGMSYSMNFESVSSLRETDEVLMLDSFLVACDPKSLLYLYGLSLDYSSELIGGGFQFSNPNASQTCGCGKSFS 113          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: YCF83_GALSU (Uncharacterized protein ycf83 OS=Galdieria sulphuraria GN=ycf83 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.070e-30
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            I +T++AL HLN +    SED L +RIG+KQGGCSG+SY M +E ++N   +D V +YD F +VCD KS+L+L+G+ LDYS +LI GGF F NPNA QTCGCGKSF+
Sbjct:    6 INITKSALDHLNSISKLNSEDKLYIRIGIKQGGCSGLSYFMTYEKKSNISDNDLVYDYDNFTLVCDNKSILYLYGISLDYSSSLIDGGFKFLNPNAKQTCGCGKSFS 112          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: YCF83_PORYE (Uncharacterized protein ycf83 OS=Porphyra yezoensis GN=ycf83 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.113e-30
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            I +T+ ALK +  ++++   D+ LRIGV+QGGCSGMSY+M FE+    +  D  +  D F +VCDPKSLL+L+G+ LD+S  LIGGGF F NPNA+QTCGCGKSF+
Sbjct:    8 ITITKPALKQIAILKNDHENDVHLRIGVRQGGCSGMSYSMNFEHVDKLKDTDERLRLDNFSVVCDPKSLLYLYGLSLDFSSELIGGGFQFSNPNASQTCGCGKSFS 113          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_METFK (Putative iron-sulfur cluster insertion protein erpA OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=erpA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.078e-22
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSER-SEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            TEE+   ++ T+NA + + ++  E  S DL LR+ V  GGCSG  Y   FE   N   DD+ ++ DG  ++ DP SL +L G ++DY D+L G  F  +NPNAT TCGCG SF+A
Sbjct:    5 TEEIPSPLIFTDNAARKVKELIDEEGSPDLKLRVFVSGGGCSGFQYGFTFEETINE--DDTTVDKDGVTLLIDPMSLQYLVGAEIDYQDSLQGSQFVIRNPNATTTCGCGSSFSA 117          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFM (Iron--sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain M12) GN=erpA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E S DL LR+ ++ GGCSG  Y  EF ENRA+   DD V+E DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEENSADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLVLETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA1_METCA (Iron-sulfur cluster insertion protein erpA 1 OS=Methylococcus capsulatus GN=erpA1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  157 KPAILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAAE 489
            +PA++ T NA   ++++ +E     L LR+ V  GGCSGM Y   FE   N   DD+ +E DG V++ DP SL +L G ++DY + L G  F  KNPNAT +C CG SF+ +
Sbjct:   11 EPALIFTGNAAAKVSELIAEEGNPALKLRVYVSGGGCSGMQYGFAFEEAVNE--DDTTVEKDGVVLLVDPTSLQYLQGAEIDYQEGLEGSRFVIKNPNATSSCSCGSSFSVD 120          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFT (Iron-sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=erpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XYLFA (Iron-sulfur cluster insertion protein erpA OS=Xylella fastidiosa GN=erpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ISCAP_ARATH1.255e-5589.57Iron-sulfur assembly protein IscA, chloroplastic O... [more]
Y1417_SYNY35.482e-3562.86Uncharacterized protein slr1417 OS=Synechocystis s... [more]
YCF83_PORPU3.008e-3358.04Uncharacterized protein ycf83 OS=Porphyra purpurea... [more]
YCF83_GALSU1.070e-3057.94Uncharacterized protein ycf83 OS=Galdieria sulphur... [more]
YCF83_PORYE3.113e-3055.66Uncharacterized protein ycf83 OS=Porphyra yezoensi... [more]
ERPA_METFK9.078e-2244.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_XYLFM8.497e-2048.51Iron--sulfur cluster insertion protein erpA OS=Xyl... [more]
ERPA1_METCA1.449e-1942.86Iron-sulfur cluster insertion protein erpA 1 OS=Me... [more]
ERPA_XYLFT5.507e-1946.53Iron-sulfur cluster insertion protein erpA OS=Xyle... [more]
ERPA_XYLFA5.507e-1946.53Iron-sulfur cluster insertion protein erpA OS=Xyle... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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