BQ623291

Overview
NameBQ623291
Unique NameBQ623291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4_ARATH (Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.275e-32
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRHGEGLNIQSIKDTIQTTNGDMLID 288
            FLDPIQYTLM+DPVILPSSRITVDRP+IQRHLLSD  DPFNR+HLT+DMLIP+ ELKAKI+EF+KS   K+   G +  S K+ IQTTN DMLID
Sbjct:  945 FLDPIQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVKSHQSKKRTSGED-SSNKERIQTTNSDMLID 1038          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4A_BOVIN (Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 195
            FLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  992 FLDPIMSTLMSDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4A_PONAB (Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 195
            FLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  992 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4A_HUMAN (Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 195
            FLDPI  TLM DPV+LPSSR+TVDR  I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  992 FLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4A_RAT (Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 195
            FLDPI  TLM DPV+LPSSR+TVD   I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct:  992 FLDPIMSTLMSDPVVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UFD2_SCHPO (Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe GN=ufd2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.750e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 204
            FLDP+ +T+MKDPV+LP S I++DR  I+ HLLSDATDPFNR+ LT D + PN  L+ +I  F+KS+
Sbjct:  935 FLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEINTFLKSK 1001          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UFD2_YEAST (Ubiquitin conjugation factor E4 OS=Saccharomyces cerevisiae GN=UFD2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 204
            FLDP+ YT+MKDPVILP+S++ +DR  I+ HLLSD+TDPFNR  L  + + PN EL+ KI  F K +
Sbjct:  885 FLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 951          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4_CAEEL (Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 195
            F DPI   +M DPV LPS  + +DR VI+RHLLS   +PFNR+ L+ + L P++ELKAKI+E+I
Sbjct:  910 FKDPIMDAIMVDPVKLPSGHV-MDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELKAKIQEWI 972          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4B_MOUSE (Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 219
            F DP+  TLM DPV LPS  + +DR +I RHLL+  TDPFNR  LT  ML P  ELK +I+ +++ +    H
Sbjct: 1103 FRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQSSDH 1173          
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Match: UBE4B_HUMAN (Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 219
            F DP+  TLM DPV LPS  I +DR +I RHLL+  TDPFNR  LT  ML P  ELK +I+ +++ +    H
Sbjct: 1232 FRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH 1302          
The following BLAST results are available for this feature:
BLAST of BQ623291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
UBE4_ARATH1.275e-3273.68Probable ubiquitin conjugation factor E4 OS=Arabid... [more]
UBE4A_BOVIN2.112e-1970.31Ubiquitin conjugation factor E4 A OS=Bos taurus GN... [more]
UBE4A_PONAB4.704e-1970.31Ubiquitin conjugation factor E4 A OS=Pongo abelii ... [more]
UBE4A_HUMAN4.704e-1970.31Ubiquitin conjugation factor E4 A OS=Homo sapiens ... [more]
UBE4A_RAT1.369e-1868.75Ubiquitin conjugation factor E4 A OS=Rattus norveg... [more]
UFD2_SCHPO5.750e-1758.21Ubiquitin conjugation factor E4 OS=Schizosaccharom... [more]
UFD2_YEAST1.850e-1556.72Ubiquitin conjugation factor E4 OS=Saccharomyces c... [more]
UBE4_CAEEL2.764e-1154.69Probable ubiquitin conjugation factor E4 OS=Caenor... [more]
UBE4B_MOUSE4.715e-1148.61Ubiquitin conjugation factor E4 B OS=Mus musculus ... [more]
UBE4B_HUMAN4.715e-1150.00Ubiquitin conjugation factor E4 B OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00382 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00382 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623291 ID=BQ623291; Name=BQ623291; organism=Citrus sinensis; type=EST; length=430bp
GGATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCGGTCATTTT
ACCTTCGTCAAGAATCACAGTTGACAGGCCTGTCATTCAGAGGCATCTTC
TCAGTGATGCTACGGATCCATTCAATCGATCTCATCTTACAGCAGACATG
TTGATACCAAACACCGAATTGAAGGCAAAAATTGAGGAATTCATCAAGTC
CCAAGGATTAAAGCGACACGGGGAAGGCTTAAACATTCAGAGCATCAAGG
ATACAATACAAACCACTAATGGGGATATGTTAATTGATTAGGGCCATTTC
AAATTCTTGATTTTGGAATGTAATTAATCTTATCTGTTTTAAATTATAGA
AATGTATCATCGGTCCTGACTCTTGAGTCTTGAGCCTGTAAAGTGGTTAT
TACCGCATTTTGCACAGAACAGAAAGAAAC
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