BQ623308

Overview
NameBQ623308
Unique NameBQ623308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8186 contig Csv1_Contig8186:527..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.812e-97
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTL+PRGQARGLTWFIP DDPTLIS+QQLFARIVGGLGGRAAEE+IFG PEVTTGAAGDLQQIT
Sbjct:  451 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPRGQARGLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQIT 558          

HSP 2 Score: 164.466 bits (415), Expect = 1.812e-97
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 3
Query:  327 GLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA-SSHSCQIPAE 635
            GLAKQMV TFGMS+IGPWSLMD G+QSGDVIMRMMARNSMSEKLAEDID AVKRLSD AYEIALSQIR+NREA+DKI+EVLLEKET+SGDEFRA  S   +IP E
Sbjct:  559 GLAKQMVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVE 663          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.276e-95
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFG  EVTTGA  DLQQIT
Sbjct:  457 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQIT 564          

HSP 2 Score: 164.851 bits (416), Expect = 1.276e-95
Identity = 86/104 (82.69%), Postives = 92/104 (88.46%), Query Frame = 3
Query:  327 GLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA-SSHSCQIPAE 635
            GLAKQMVTTFGMSEIGPWSLMD S+  DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQIRNNREA+DKI+E+LLEKETMSGDEFRA  S   +IP E
Sbjct:  565 GLAKQMVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPE 668          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 6.884e-94
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDRIVAGMEGTVMTDGKSKSLVAYHEVGHA+CGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEE+IFG  EVTTGA GDLQQIT
Sbjct:  464 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQIT 571          

HSP 2 Score: 157.147 bits (396), Expect = 6.884e-94
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 3
Query:  327 GLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA-SSHSCQIPAE 635
            GLA+QMVTTFGMS+IGPWSLMD S   DVIMRMMARNSMSEKLAEDID+AVK+LSD AYEIALS I+NNREA+DK++EVLLEKET+ GDEFRA  S   +IP E
Sbjct:  572 GLARQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPE 675          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.414e-82
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDRIVAGMEGT M DGKSK++VAYHEVGHAIC TLT GHDPVQKVTLVPRGQARGLTWF+P +DPTL+SKQQLFARIVGGLGGRAAE+VIFG PE+TTGAAGDLQQ+T
Sbjct:  461 IDRIVAGMEGTKMIDGKSKAIVAYHEVGHAICATLTEGHDPVQKVTLVPRGQARGLTWFLPGEDPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVT 568          

HSP 2 Score: 129.028 bits (323), Expect = 1.414e-82
Identity = 62/93 (66.67%), Postives = 80/93 (86.02%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGS-QSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A+QMVT FGMSEIGPW+L D + +  DV++RM+ARNSMSEKLAEDID+ VK++   AYE+A   +RNNREAIDK+++VLLEKET++GDEFRA
Sbjct:  570 IARQMVTMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRA 662          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.413e-76
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDRIVAG+EGT MTDGKSK LVAYHE+GHA+C TLT GHD VQKVTL+PRGQARGLTWF+P  +DP L+S+QQ+FA IVGGLGGRAAEEV+FG PEVTTGAAGDLQQ+T
Sbjct:  459 IDRIVAGLEGTSMTDGKSKMLVAYHEIGHAVCATLTAGHDEVQKVTLIPRGQARGLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVT 567          

HSP 2 Score: 122.094 bits (305), Expect = 1.413e-76
Identity = 57/93 (61.29%), Postives = 79/93 (84.95%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFRA 605
            +A++MVT FGMSEIGPW+L +  +Q GDV++RM+AR+SMSE+LA DIDAAV+ + D AYE+A + +R NR AID++++VL+EKET+ GDEFRA
Sbjct:  569 VARRMVTAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRA 661          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.672e-56
Identity = 81/108 (75.00%), Postives = 92/108 (85.19%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR+VAGMEGT + D KSK L+AYHEVGHAI G+L   HDPVQKVTL+PRGQARGLTWF PSDD +LIS+ Q+ ARIVG LGGRAAEE+IFG  EVTTGA+ DLQQ+T
Sbjct:  410 IDRVVAGMEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVT 517          

HSP 2 Score: 69.3218 bits (168), Expect = 4.672e-56
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMR--MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+QMVT FGMS+IGP SL   SQ GD  +   M   +  S+++A +ID  V+ +    Y  A   I +NR  ID+++++L+EKET+ G+EFR
Sbjct:  519 MARQMVTRFGMSKIGPLSLE--SQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDNRVVIDRLVDLLIEKETIEGNEFR 609          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.091e-56
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            +DR+VAGMEGT + D KSK L+AYHEVGHAI GTL   HDPVQKVTL+PRGQA+GLTWF P+++  L +K QL ARI G +GGRAAEE +FG  EVTTGA GDLQQ+T
Sbjct:  409 VDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQGLTWFTPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVT 516          

HSP 2 Score: 78.1814 bits (191), Expect = 6.091e-56
Identity = 39/93 (41.94%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMR--MMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+QMVT FGMS +GP SL   S  G+V +   +M R+  SE++A  IDA V++L+++ +++A   ++  RE +D+++++L+EKET+ G+EFR
Sbjct:  518 MARQMVTRFGMSNLGPISLE--SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFR 608          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.941e-56
Identity = 78/108 (72.22%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR++AGMEG  + D K+K L+AYHEVGHAI GTL   HDPVQKVTLVPRGQA+GLTWF PS+D +LIS+ Q+ ARI+G LGGRAAEEV+FG PEVTTGA  DLQQ+T
Sbjct:  410 IDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDPVQKVTLVPRGQAKGLTWFTPSEDQSLISRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVT 517          

HSP 2 Score: 71.633 bits (174), Expect = 7.941e-56
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSM-SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+QMVT FGMS IGP SL +   S   + R M  +S  SE +A  ID  V+ +    +   +  I++NR  IDK++++L+EKET+ GDEFR
Sbjct:  519 MARQMVTRFGMSNIGPLSL-ESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFR 609          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.759e-55
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 2
Query:    2 IDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            IDR+VAG+EGT + D KSK L+AYHEVGHAI G+L   HDPVQKVTL+PRGQARGLTWF PSDD +LIS+ Q+ ARIVG LGGRAAEE+IFG  EVTTGA+ DLQQ+T
Sbjct:  410 IDRVVAGLEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVT 517          

HSP 2 Score: 68.5514 bits (166), Expect = 1.759e-55
Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            +A+QMVT FGMS+IGP SL        +   M   +  S+++A +ID  V+ +    Y+ A   +++NR  +D+++++L+EKET+ G+EFR
Sbjct:  519 MARQMVTRFGMSKIGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEFR 609          
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.532e-50
Identity = 66/107 (61.68%), Postives = 83/107 (77.57%), Query Frame = 2
Query:    5 DRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGGPEVTTGAAGDLQQIT 325
            DRI+ G+ G  M D K+K L+AYHEVGHAI G++   HD V+K+TL PRG A+GLTWF P +D +L+S+  L ARI+  LGGRAAE+VIFG PEVTTGA+ DLQQ+T
Sbjct:  424 DRIIGGIAGAPMEDTKNKRLIAYHEVGHAITGSVLKSHDEVEKITLTPRGGAKGLTWFTPEEDQSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVT 530          

HSP 2 Score: 76.6406 bits (187), Expect = 4.532e-50
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  330 LAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKILEVLLEKETMSGDEFR 602
            LA+QMVT FGMS IGP +L D S +G V +   M + +  +E +A+ ID  V+++    YE A+  + +NR  ID I+E LL+KETM GDEFR
Sbjct:  532 LARQMVTRFGMSNIGPLALEDES-TGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFR 623          
The following BLAST results are available for this feature:
BLAST of BQ623308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
FTSH2_ORYSJ1.812e-9795.37Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH1.276e-9594.44Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH6.884e-9493.52Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH1.414e-8287.04Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ1.413e-7680.73Cell division protease ftsH homolog 6, chloroplast... [more]
FSTH_PORYE4.672e-5675.00Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH1_SYNY36.091e-5669.44Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FTSH_GUITH7.941e-5672.22Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_PORPU1.759e-5574.07Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH_ODOSI4.532e-5061.68Cell division protease ftsH homolog OS=Odontella s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00399 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00399 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623308 ID=BQ623308; Name=BQ623308; organism=Citrus sinensis; type=EST; length=642bp
GATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTCATGACAGATGGGA
AGAGTAAAAGTCTTGTTGCATACCATGAAGTTGGCCACGCAATATGCGGA
ACTTTGACTCCTGGACACGATCCCGTTCAAAAAGTCACCCTTGTTCCACG
TGGTCAGGCAAGAGGTCTTACCTGGTTCATCCCTTCAGATGACCCCACCT
TGATATCGAAGCAGCAGCTCTTTGCAAGAATTGTTGGTGGACTCGGTGGT
AGAGCTGCTGAGGAAGTGATTTTTGGAGGGCCTGAAGTGACAACAGGAGC
AGCTGGTGATTTGCAGCAGATCACTTGGTTTGGCCAAACAGATGGTAACC
ACATTTGGAATGTCTGAAATTGGCCCATGGTCGCTCATGGACGGATCACA
GAGTGGTGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCTGAGA
AGCTTGCTGAAGACATTGATGCTGCAGTCAAGAGACTATCAGACCGTGCC
TATGAGATTGCGTTGAGCCAAATAAGGAACAACCGTGAAGCCATTGACAA
GATCCTGGAAGTTCTTCTTGAGAAGGAAACAATGTCAGGGGATGAATTCC
GGGCATCCTCTCACAGTTGTCAAATCCCAGCTGAAATAGGGG
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