BQ623321

Overview
NameBQ623321
Unique NameBQ623321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6075 contig Csv1_Contig6075:142..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.024e-65
Identity = 115/141 (81.56%), Postives = 130/141 (92.20%), Query Frame = 3
Query:   66 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSPCCT 488
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED    T
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVAT 162          

HSP 2 Score: 24.6386 bits (52), Expect = 1.024e-65
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  491 GFGNHLARAIL 523
            GFGNHLAR IL
Sbjct:  163 GFGNHLARPIL 173          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.457e-36
Identity = 67/137 (48.91%), Postives = 103/137 (75.18%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE 470
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYE 178          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.708e-35
Identity = 67/153 (43.79%), Postives = 109/153 (71.24%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSPCCTWVLGIILQGP 518
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  NG+ +LG V  +GV +E +P      G  L  P
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYE-APTIATGFGAYLAQP 171          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 147.902 bits (372), Expect = 2.708e-35
Identity = 65/137 (47.45%), Postives = 103/137 (75.18%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE 470
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYE 178          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.033e-35
Identity = 65/137 (47.45%), Postives = 102/137 (74.45%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE 470
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYE 178          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 7.880e-35
Identity = 66/140 (47.14%), Postives = 102/140 (72.86%), Query Frame = 3
Query:   51 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFE 470
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+GG   G+ +LG V M+GV +E
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYE 177          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.324e-33
Identity = 64/136 (47.06%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   66 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFED 473
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKD 170          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.623e-30
Identity = 61/138 (44.20%), Postives = 95/138 (68.84%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNF 467
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV  +N + Y+    + G  +
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTY 169          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.031e-29
Identity = 64/148 (43.24%), Postives = 100/148 (67.57%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSPCCT 488
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+ NG ++L  V+++GV +      T
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLAT 177          

HSP 2 Score: 20.7866 bits (42), Expect = 1.031e-29
Identity = 8/16 (50.00%), Postives = 10/16 (62.50%), Query Frame = 2
Query:  476 PMLHLGFGNHLARAIL 523
            P L  GFG H+A  +L
Sbjct:  173 PTLATGFGAHMANPLL 188          
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.078e-27
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 3
Query:   60 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 398
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MYNRR K +PLW +
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154          
The following BLAST results are available for this feature:
BLAST of BQ623321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSB4_ARATH1.024e-6581.56Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN5.457e-3648.91Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_XENLA2.708e-3543.79Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_HUMAN2.708e-3547.45Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE6.033e-3547.45Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT7.880e-3547.14Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_DICDI4.324e-3347.06Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_SCHPO2.623e-3044.20Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_YEAST1.031e-2943.24Proteasome component PRE4 OS=Saccharomyces cerevis... [more]
PSB4_PIG2.078e-2748.67Proteasome subunit beta type-4 (Fragment) OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00412 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00412 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623321 ID=BQ623321; Name=BQ623321; organism=Citrus sinensis; type=EST; length=526bp
CTCAAAACGAATTAATGGAATCGATCCAAGCCAAACAAGGACTTGTCGGC
CCTAACGACCCCATTCAAAGAACCCAGTTACCATATGTGACTGGTACATC
TGTTGTTGCGCTGAAGTACAAAGATGGCATATTAATGGCTGCTGACATGG
GAGGTTCCTATGGGTCAACAATCCGATACAAGAGTGTGGAACGGATTAAA
CCTATTGGAAAGCATTCTCTACTGGGTGCCAGTGGAGAAATAAGTGATTT
TCAGGAGCTTTTGCGTAATCTTGATGAGCTTATACTTTATGACAATATGT
GGGATGATGGGAACTCTTTGGGGCCAAAAGAGTTGCACAGCTATTTGACC
AGGGTCATGTATAACAGGCGTAACAAGTTTGATCCATTGTGGAACTCTCT
TGTGCTTGGTGGAGTGAAAAATGGACAGAAATATCTTGGCATGGTATCAA
TGATAGGAGTGAACTTTGAGGACAGCCCATGTTGCACCTGGGTTTTGGGA
ATCATCTTGCAAGGGCCATTCTTCTG
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