BQ623329

Overview
NameBQ623329
Unique NameBQ623329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:241..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.397e-50
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FVGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDENLLSQIKDGF  GKDLVVSV  AMGEE+I +LKDIGPK
Sbjct:   60 FVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 1.397e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.397e-50
Identity = 91/100 (91.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDENLLS IKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   60 FVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 1.397e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.821e-50
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LLSQIKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   60 FVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 1.821e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.094e-50
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF+ GKDLVVSV  AMGEEQINA+KD+G K
Sbjct:   60 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159

HSP 2 Score: 36.1946 bits (82), Expect = 3.094e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.256e-50
Identity = 90/100 (90.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   60 FVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 5.256e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 6.851e-50
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF+ GKDLVVSV  AMGEEQINA+KDIG K
Sbjct:   60 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159

HSP 2 Score: 36.1946 bits (82), Expect = 6.851e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.578e-49
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   60 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 2.578e-49
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.380e-49
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIFNGKKLEDIVPSSHNCD+PHV RT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDE L++QIK+GFESGKDLVV+VQ AMGEEQI ALKD+GPK
Sbjct:   61 FVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160

HSP 2 Score: 36.1946 bits (82), Expect = 4.380e-49
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   45 EVSTSKTGKHGHAKCH 60
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.441e-49
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   60 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 7.441e-49
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
[Close]
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.649e-48
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:   52 FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 351
            FV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   60 FVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

HSP 2 Score: 36.1946 bits (82), Expect = 3.649e-48
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 
Query:    3 EVSTSKTGKHGDAKCH 50
            EVSTSKTGKHG AKCH
Sbjct:   44 EVSTSKTGKHGHAKCH 59
The following BLAST results are available for this feature:
BLAST of BQ623329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_MANES1.397e-5091.00Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A3_SOLLC1.397e-5091.00Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLTU1.821e-5090.00Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_SOLLC3.094e-5088.00Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_NICPL5.256e-5090.00Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A3_SOLTU6.851e-5088.00Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_SENVE2.578e-4989.00Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MAIZE4.380e-4986.00Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A2_MEDSA7.441e-4987.00Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A5_SOLTU3.649e-4885.00Eukaryotic translation initiation factor 5A-5 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00420 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00420 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623329 ID=BQ623329; Name=BQ623329; organism=Citrus sinensis; type=EST; length=588bp
GGGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTGATGCTAAGTGTCAC
CTTTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGATATTGTTC
CCTCTTCCCACAACTGTGATGTTCCTCATGTCACTCGCACTGACTACCAG
CTGATTGATATCTCTGAGGATGGATTTGTTAGCCTGCTGACTGAGAATGG
CAATACCAAGGATGACCTGAGACTTCCAACTGATGAAAATCTGCTTTCAC
AGATCAAGGATGGATTTGAGAGTGGGAAAGATCTGGTTGTCTCAGTTCAG
TGTGCTATGGGAGAGGAGCAGATCAATGCCCTGAAGGACATTGGCCCCAA
GTAAAAGACTTTTTGCTTGATCGAGAATGCAGATTGCTGAAAGCTGTGGG
AAGGTGGATAGTAGTGTAGCTTACTGGTGTCCGGTTTCAAGATGAATGTC
ATCATTTCATATAAAATGACTCTTACCATATTATTAATTGTTTTCTATCG
ACAATATTTTTATTCTGTTTGATTGCTTGAAAGTTGAAACATGGTTGTTC
TCGGGGTGCAGAAGTTGTATCCGCCAACGTGACTGTAT
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