BQ623336

Overview
NameBQ623336
Unique NameBQ623336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623336_ssr29 microsatellite BQ623336_ssr29:29..38. BLAST: Citrus ESTs to Prunus persica proteins V1
BQ623336_ssr59 microsatellite BQ623336_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig443 contig Csv1_Contig443:12..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623336 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.632e-45
Identity = 80/151 (52.98%), Postives = 101/151 (66.89%), Query Frame = 3
Query:  102 PEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENXXXXXXXXXIKEKSGTPSTLYRGQLVLP-AVFAIGAVWDAFVRFW 551
            P V A ++ VG N+ W  N+NYTIWA+ KHFY GDWL+FV+DRNQ N+LEVNKTDYE C +DHP+ NWT GAGRD+V LN T+HYY + GKG CYGGMKL+V+VE          +K            Q ++P ++FA  A+WD   R W
Sbjct:   22 PGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172          
BLAST of BQ623336 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  114 ATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVE 416
            AT + VG   GW    +Y+ WA DK F  GD L F Y      V EV ++DY+SC S + +   +TGA    +PL     +YFI G  G   GGMKL+++V+
Sbjct:   24 ATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGA--TTIPLKKAGKHYFICGVPGHSTGGMKLSIKVK 123          
BLAST of BQ623336 vs. ExPASy Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  114 ATRWIVGANQGWTNNV--NYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVE 416
            AT   VG + GWT  V  +Y  WA    F+ GD L F Y+    NVL+V++  ++SCNS  P  ++T+GA  D +PL     +YF+ G  G C  G K+ ++V+
Sbjct:    1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGA--DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 102          
The following BLAST results are available for this feature:
BLAST of BQ623336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LAML_ARATH7.632e-4552.98Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
BCP_PEA2.927e-1240.20Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
MAVI_CUCPE1.112e-1138.46Mavicyanin OS=Cucurbita pepo PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00427 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00427 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623336 ID=BQ623336|Name=BQ623336|organism=Citrus sinensis|type=EST|length=644bp
CTTTTTGGAAGGCTGAGAGTGCGGGAGTGAGAGAGAGAATGAGGGCAGGA
ATGACGGTGGCGGCGGCGGCCGTGCTGGTGGTTGCCATGACGATTCTGGT
GCCGGAGGTGGATGCAACTAGATGGATTGTGGGAGCCAACCAAGGTTGGA
CCAATAACGTGAACTATACCATATGGGCAAAAGATAAGCACTTTTACAAT
GGGGACTGGCTCTTCTTTGTGTATGACAGGAACCAGATGAATGTGCTAGA
GGTGAACAAAACAGACTACGAATCATGCAACTCTGATCATCCCCTTCACA
ACTGGACCACAGGAGCAGGAAGAGATGTGGTTCCTCTGAATGTGACCCGG
CATTACTACTTCATCAGCGGAAAGGGCTTCTGCTATGGTGGCATGAAGTT
AGCTGTCCGTGTTGAGAACCCGCCTCCTCCTCCCTCGGCTTCCCCTATTA
AAGAAAAGAGCGGCACACCAAGTACTCTCTACAGAGGCCAGCTTGTTTTG
CCAGCAGTTTTTGCCATTGGTGCTGTCTGGGATGCATTCGTCCGGTTCTG
GTAACAATGTCAAGCTTAGAATTATTTATAAGGATACTCAGAATCTCCTT
AGACATTCCTTAAATCTATTTGTGAAAGGAACTGAGTCCTCTTC
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