BQ623343 | Citrus Genome Database

Overview


Name	BQ623343
Unique Name	BQ623343
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	303

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:697..999.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  198 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.936e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.936e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  143 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.936e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  192 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.834e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   53 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

[Close]

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.834e-31
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2

Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

The following BLAST results are available for this feature:

BLAST of BQ623343 vs. ExPASy Swiss-Prot

BLAST of BQ623343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
CB24_TOBAC	1.721e-31	100.00	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB23_NICPL	1.721e-31	100.00	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB22_TOBAC	1.721e-31	100.00	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]
CB22_ORYSJ	1.721e-31	100.00	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ORYSJ	1.721e-31	100.00	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB2B_PINSY	2.936e-31	98.44	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB22_CUCSA	2.936e-31	98.44	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB21_CUCSA	2.936e-31	98.44	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2D_SOLLC	3.834e-31	98.44	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB25_PETSP	3.834e-31	98.44	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00434 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00434 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623343 ID=BQ623343; Name=BQ623343; organism=Citrus sinensis; type=EST; length=303bp
TGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAA
GGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACC
GGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAA
TAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTT
CGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATC
TGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAAT
GCT