BQ623360

Overview
NameBQ623360
Unique NameBQ623360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10264 contig Csv1_Contig10264:368..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.007e-64
Identity = 119/214 (55.61%), Postives = 158/214 (73.83%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            L + VILP+++  LF + +LL P KGVLLYGPPG GKT++AKA AKE+G  FIN++ S L  KW+G++QKL AAVFSLA KLQP+IIFIDE+DSFL  R +SDHEA   MK +FM+LWDG  TD + +V+V+ ATNRP +LD AI+RR+P  F I  P  K+R  ILK+ILK E V+ ++D   +A   +GF+GSDL E+C+ AA   +RE ++
Sbjct:  103 LKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVN 316          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.007e-64
Identity = 119/214 (55.61%), Postives = 158/214 (73.83%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            L + VILP+++  LF + +LL P KGVLLYGPPG GKT++AKA AKE+G  FIN++ S L  KW+G++QKL AAVFSLA KLQP+IIFIDE+DSFL  R +SDHEA   MK +FM+LWDG  TD + +V+V+ ATNRP +LD AI+RR+P  F I  P  K+R  ILK+ILK E V+ ++D   +A   +GF+GSDL E+C+ AA   +RE ++
Sbjct:  103 LKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVN 316          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.007e-64
Identity = 119/214 (55.61%), Postives = 158/214 (73.83%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            L + VILP+++  LF + +LL P KGVLLYGPPG GKT++AKA AKE+G  FIN++ S L  KW+G++QKL AAVFSLA KLQP+IIFIDE+DSFL  R +SDHEA   MK +FM+LWDG  TD + +V+V+ ATNRP +LD AI+RR+P  F I  P  K+R  ILK+ILK E V+ ++D   +A   +GF+GSDL E+C+ AA   +RE ++
Sbjct:  103 LKDTVILPIKKKHLFENSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGCRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVN 316          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 5.841e-64
Identity = 115/211 (54.50%), Postives = 156/211 (73.93%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 647
            + + VILP ++  LFS  KLL P KGVLLYGPPG GKT++AKA AK SG  FIN++ S L  KW+G++QKL AAVFSLA K+QP IIF+DE+DSFL  R + DHEA   MK +FM+LWDG  T +N++VMV+ ATNRP ++D AILRR+P AF +G+P+  +R +IL++IL GE +   I+   +A   EG++GSDL E+C+ AA + +R+
Sbjct:  106 MQDTVILPFQKRHLFSGSKLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSMDHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVRD 316          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 242.662 bits (618), Expect = 1.301e-63
Identity = 117/213 (54.93%), Postives = 156/213 (73.24%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 653
            L + VILP+++  LF   +LL P KGVLLYGPPG GKT++AKA AKE+G  FIN++ S L  KW+G++QKL AAVFSLA KLQP+IIFIDE+DSFL  R +SDHEA   MK +FM+LWDG  TD N +V+++ ATNRP +LD AILRR+P  F I  P+ ++R  ILK+IL+ E VE  ++   +A   +GF+GSDL E+C+ AA   +R+ +
Sbjct:  107 LKDTVILPIQKRHLFEGSRLLQPPKGVLLYGPPGCGKTLIAKATAKEAGFRFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRSSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRDFV 319          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.539e-59
Identity = 113/214 (52.80%), Postives = 157/214 (73.36%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN-IDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 653
            L+E VI PL  PE++S+  LL    GVLLYGPPG GKTMLAKA+AKESGA FI++R+S++M KW+G++ K+V A+FSLA KLQP IIFIDE+DSFL +R ++DHE    +K EFM LWDG     N RVM++ ATNR +++D+A LRRLP+ F + +P   +R +IL V+LK  K++E+  D   +A   +GF+GSDL E+C++AA  + +E +
Sbjct:  103 LHESVIYPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSSTDHEVTATLKAEFMTLWDGLL--NNGRVMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKEYI 314          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.820e-57
Identity = 112/215 (52.09%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   15 LYELVILPLRRPELF-SHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 656
            L + V+ PL+ PE+F +HG LL   KG+LLYGPPG GKTMLAKA+AK+S A FINV +  L  KWFG++ KLV A+F+LA KL+P IIFIDE+D+FL QR+ +DHEA+  +K EFM++WDG  + Q +RV+VL ATNRP+++DEAI RR+P+ F I +P+ ++R +IL++ LK   +E N D++ +     G +GS + EVC+ A     REL D
Sbjct:  101 LLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLLSGQ-SRVLVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVPRRELFD 314          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 4.483e-56
Identity = 106/204 (51.96%), Postives = 149/204 (73.04%), Query Frame = 3
Query:   15 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQA 626
            L + +ILPLR     S   LL P +G+LLYGPPG GKT+LAKA+A+ +G  FIN+++SNL  KW+G++QKL AAVFS+A K QP IIFIDE+DSFL  R++ DHE+   MK +FM LWDGF++  + +++V+ ATNRP ++D AILRR+   F++ +P+ K+R+QIL VIL+ EK+   ++   +A   EG +GSDL EVC+ A
Sbjct:   95 LKDRIILPLRFASQ-SGSHLLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQSHDHESTAMMKAQFMTLWDGFSSSGD-QIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVCRLA 296          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_IXOSC (Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.033e-52
Identity = 110/216 (50.93%), Postives = 148/216 (68.52%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENID-FDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKTMLAKA+A ES + F+N+  ++L SK+ G+ +KLV A+F++A +LQP+IIFIDEVDS L +R+ ++HEA   +KTEF+  +DG  T    RV+V+ ATNRP ELD+A LRR  +   + +PD   R  +L+ +LK      + D   YLA L EG++GSDL  + K AA   IREL
Sbjct:  383 KQALSEMVILPTDRPELFTG--LRAPPKGLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLSERKDNEHEATRRLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALRRFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSADKLKYLARLTEGYSGSDLTALAKDAALGPIREL 596          
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 109/217 (50.23%), Postives = 149/217 (68.66%), Query Frame = 3
Query:    6 KQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL-KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 650
            KQAL E+VILP  RPELF+   L  P KG+LL+GPPG GKT+LA+A+A E  A F ++  + L SK+ GD +KLV A+F++A +LQP+IIFIDEVDS L +R +++HEA   +KTEF+  +DG   +  A R++V+AATNRP ELDEA LRR P+   + +PDR  R  +L+ +L K      + D  +LA L EG++GSDL  + + AA   IREL
Sbjct:  512 KQALQEMVILPSVRPELFTG--LRTPAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAALEPIREL 726          
The following BLAST results are available for this feature:
BLAST of BQ623360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 395
Match NameE-valueIdentityDescription
ATAD1_RAT2.007e-6455.61ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE2.007e-6455.61ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN2.007e-6455.61ATPase family AAA domain-containing protein 1 OS=H... [more]
ATD1A_DANRE5.841e-6454.50ATPase family AAA domain-containing protein 1-A OS... [more]
ATD1B_DANRE1.301e-6354.93ATPase family AAA domain-containing protein 1-B OS... [more]
MSP1_YEAST2.539e-5952.80Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
YJNA_SCHPO1.820e-5752.09Uncharacterized AAA domain-containing protein C24B... [more]
MSP1_CAEEL4.483e-5651.96Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
SPAST_IXOSC1.033e-5250.93Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1[more]
SPAST_ANOGA9.672e-5150.23Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00451 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00451 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623360 ID=BQ623360; Name=BQ623360; organism=Citrus sinensis; type=EST; length=658bp
CTATCAAGCAAGCTTTGTATGAATTGGTGATTCTTCCTTTACGAAGGCCG
GAGTTGTTTTCTCATGGGAAGCTTCTCGGTCCCCAGAAAGGAGTTCTGTT
GTATGGACCTCCTGGTACCGGAAAGACCATGCTTGCCAAAGCTATTGCAA
AAGAGTCCGGTGCTGTTTTCATTAATGTTAGGATATCAAATTTGATGAGC
AAGTGGTTTGGTGATGCTCAGAAACTCGTGGCTGCTGTATTTAGCTTGGC
CTATAAACTCCAGCCTGCTATTATATTTATTGATGAGGTTGACAGCTTTT
TGGGTCAGCGTCGTACTTCAGACCATGAAGCATTGACAAATATGAAGACT
GAGTTTATGGCTTTATGGGATGGGTTTACAACAGATCAAAATGCCCGTGT
GATGGTTCTTGCGGCAACTAATCGTCCGTCAGAACTTGATGAAGCAATAC
TTCGGCGTCTCCCTCAAGCCTTTGAAATTGGGATGCCAGACCGCAAGGAG
AGGGCTCAGATACTGAAGGTGATTTTAAAGGGTGAGAAGGTCGAAGAGAA
CATAGACTTTGACTATTTAGCCGGTTTGTGTGAGGGATTCACGGGTTCAG
ACCTTCTTGAAGTTTGCAAGCAAGCAGCCTACTTTTCTATTAGGGAACTA
CTAGATGA
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