BQ623370

Overview
NameBQ623370
Unique NameBQ623370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:424..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 5.563e-45
Identity = 82/96 (85.42%), Postives = 90/96 (93.75%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 289
            TCARV+IGQVLLSVRCKD NSHHAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  125 TCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.053e-43
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 2
Query:    5 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 286
            CARVAIGQVLLSVRCKD NS+HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  126 CARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.987e-43
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 2
Query:    5 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:   55 CARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.820e-42
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 2
Query:    5 CARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            CARVAIGQVLLSVRCKD+NSH+AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  126 CARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 3.732e-41
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            TCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  125 TCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.852e-40
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            TCARVAIGQVLLSVRCKD++ HHAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  125 TCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.159e-40
Identity = 75/93 (80.65%), Postives = 89/93 (95.70%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 280
            TCARVAIGQVLLSVR +D++S+HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  125 TCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.603e-38
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 289
            TCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQPG AF+ AT+
Sbjct:  125 TCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFISATS 220          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.124e-37
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            TCARV IGQVLLSVRCKD+N+ HA EALRRAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:  125 TCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.503e-37
Identity = 75/94 (79.79%), Postives = 82/94 (87.23%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            TCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  125 TCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
The following BLAST results are available for this feature:
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_VITRI5.563e-4585.4260S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_SOLME3.053e-4389.3660S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_TOBAC3.987e-4390.3260S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_EUPES9.820e-4287.1060S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH3.732e-4184.0460S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH1.852e-4081.9160S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL10_PINTA3.159e-4080.6560S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL103_ARATH8.603e-3878.1360S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL10_MAIZE1.124e-3780.8560S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ORYSJ2.503e-3779.7960S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00461 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00461 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623370 ID=BQ623370; Name=BQ623370; organism=Citrus sinensis; type=EST; length=493bp
AACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCA
AGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTC
AAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTAC
CAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTG
TCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCT
CAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTA
CTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCA
TTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATG
TTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTTGCA
ATTTGCACTCTTCTATATGATTTGTATGGTTTATTTTTATTCC
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