BQ623373

Overview
NameBQ623373
Unique NameBQ623373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623373 vs. ExPASy Swiss-Prot
Match: TO401_ARATH (Mitochondrial import receptor subunit TOM40 homolog 1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 3.877e-61
Identity = 115/159 (72.33%), Postives = 131/159 (82.39%), Query Frame = 2
Query:    2 VPPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTET-IKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQ 475
            +PP T  + DA T   K +EKVDY NLP P+PYEE+HREALMSLK + FEGLRFDFT+ LNQKFSLSHSV+MGPTE+P+QS ET IKIPTAHYEFGANY DPKL+LIGRV+TDGRLNAR+K DL+D L +KANA +TNE HMS  M NFDY G DYR Q
Sbjct:    5 LPPLTAAQVDAKT---KVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDFTRALNQKFSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYDPKLLLIGRVMTDGRLNARLKADLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQ 160          
BLAST of BQ623373 vs. ExPASy Swiss-Prot
Match: TO402_ARATH (Putative mitochondrial import receptor subunit TOM40 homolog 2 OS=Arabidopsis thaliana GN=TOM40-2 PE=2 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 3.886e-53
Identity = 103/159 (64.78%), Postives = 123/159 (77.36%), Query Frame = 2
Query:    5 PPGTTVKPDASTAKPKEEEKVDYMNLPCPIPYEEIHREALMSLKPELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQ--STETIKIPTAHYEFGANYIDPKLMLIGRVLTDGRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQ 475
            PP  T + DA T   K +EKVDY NLPCP+ YEE++REA M+LKPELFEG R D+ K LNQKF LSHS++MGPTE+P+   S+E IKIPTA+Y+FGA +IDPKL LIGR+ TDGRLNAR K DL+DN S+KANA LT+E   S G +  DYKG DYRTQ
Sbjct:    6 PPINTAQVDAKT---KLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDYNKSLNQKFFLSHSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFIDPKLYLIGRITTDGRLNARAKFDLTDNFSVKANALLTDEEDKSQGHLVIDYKGSDYRTQ 161          
The following BLAST results are available for this feature:
BLAST of BQ623373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TO401_ARATH3.877e-6172.33Mitochondrial import receptor subunit TOM40 homolo... [more]
TO402_ARATH3.886e-5364.78Putative mitochondrial import receptor subunit TOM... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00464 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00464 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623373 ID=BQ623373; Name=BQ623373; organism=Citrus sinensis; type=EST; length=476bp
TGTACCTCCAGGTACAACAGTGAAACCTGACGCATCGACGGCCAAGCCTA
AGGAAGAAGAGAAAGTTGATTACATGAACTTGCCTTGCCCGATTCCCTAT
GAGGAAATCCACCGCGAAGCTTTAATGTCTTTGAAGCCGGAACTTTTCGA
GGGATTGCGCTTTGATTTTACCAAAGGACTTAATCAGAAATTCTCACTCA
GTCATAGTGTGATCATGGGACCAACAGAAATTCCTTCACAATCCACAGAA
ACCATTAAAATCCCTACTGCTCACTATGAGTTCGGTGCTAACTATATTGA
CCCGAAGTTGATGCTCATTGGGAGGGTATTGACCGATGGCAGACTAAATG
CTAGAGTGAAGTGTGATCTGTCCGACAATCTTTCTTTGAAAGCTAATGCT
CAGCTTACAAATGAGCCTCATATGTCACATGGCATGATCAACTTTGATTA
TAAGGGTAAGGACTACAGGACTCAGT
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