BQ623375

Overview
NameBQ623375
Unique NameBQ623375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:37..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 4.738e-74
Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK VKVSGVSLLALFKEKKEKPRS
Sbjct:    2 GKTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 4.011e-73
Identity = 135/141 (95.74%), Postives = 136/141 (96.45%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+  GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK VKVSGVSLLALFKEKKEKPRS
Sbjct:    2 GKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 2.874e-71
Identity = 133/141 (94.33%), Postives = 134/141 (95.04%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK VKVSGVSLLALFKEKKEKPRS
Sbjct:    2 GKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.335e-68
Identity = 130/141 (92.20%), Postives = 132/141 (93.62%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK VKVSGVSLLALFKEKKEKPRS
Sbjct:    2 GKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.434e-62
Identity = 113/142 (79.58%), Postives = 125/142 (88.03%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK VKV+ VSLLAL+K+KKE+PRS
Sbjct:    2 GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.065e-61
Identity = 113/142 (79.58%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFK VKV+ VSLLAL+KEKKE+PRS
Sbjct:    2 GKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.748e-60
Identity = 110/142 (77.46%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK VKV+ VSLLAL+KEKKE+PRS
Sbjct:    2 GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.748e-60
Identity = 110/142 (77.46%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK VKV+ VSLLAL+KEKKE+PRS
Sbjct:    2 GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.894e-60
Identity = 112/142 (78.87%), Postives = 123/142 (86.62%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFK VKV+ VSLLAL+KEKKE+PRS
Sbjct:    2 GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.642e-60
Identity = 110/142 (77.46%), Postives = 124/142 (87.32%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ +G+ A RKLK+HR+ QRW DK YKK+HLG  WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK VKV+  SL+ALFK KKE+PRS
Sbjct:    2 GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
The following BLAST results are available for this feature:
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN4.738e-7496.4540S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES4.011e-7395.7440S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH2.874e-7194.3340S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.335e-6892.2040S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU5.434e-6279.5840S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA2.065e-6179.5840S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR1.748e-6077.4640S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA1.748e-6077.4640S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_DROME3.894e-6078.8740S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_BRUMA6.642e-6077.4640S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00466 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00466 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623375 ID=BQ623375; Name=BQ623375; organism=Citrus sinensis; type=EST; length=573bp
TTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAATCCTCTTC
GTAACGCCAACATGGGGAAGACATCGTGGAATGGGAGCGGGTCGCAAGCT
GAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAAT
CCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCA
AAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTC
CGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGA
TTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTGAAGAAAAT
GACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGA
TATTCCTGGTGTTAGATTTAAGGGTGTCAAGGTTTCAGGCGTGTCTCTTC
TGGCCCTCTTCAAGGAGAAGAAGGAGAAACCCAGATCCTAAACTCCTGAT
TCAAGATACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAAT
CCCCGTTGATTACTGGTTTCCTT
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