BQ623377

Overview
NameBQ623377
Unique NameBQ623377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig20 contig Csv1_Contig20:1..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623377 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 85/194 (43.81%), Postives = 109/194 (56.19%), Query Frame = 3
Query:   21 SQLQSPT-GIQMRQNMNQQLRSSYPASSSPVR-PSQSFGIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRAGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLV 596
            S + SP+   QM QNMNQ     YP  SSPVR P    G ++S A A AV+ +RS AFAKRS SF                +T A   SNL+DWGSP+GKL+WG++ E+LNK+R+S SFGI  N  + A  +       DEPDVSWV SLV+DS  +    FG  E+           + +W EQ+Y E+EQ V
Sbjct:  420 SYVSSPSRNSQMGQNMNQH----YP--SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF--------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNNNNNAARD-----YRDEPDVSWVNSLVKDSTVVSERSFGMNER---------VRIMSWAEQMYREKEQTV 579          
BLAST of BQ623377 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.667e-30
Identity = 86/200 (43.00%), Postives = 114/200 (57.00%), Query Frame = 3
Query:   12 ASASQLQSPTGIQMRQNMNQQLRSSYPASSSPVRPSQSFGIDTSGAIAAAVLSSRSAAFAKRSQSFIERNTVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPAT--ADEPDVSWVQSLVRDSPSIRAGQFGFEEQQCHLNSGGSE---MLPAWVEQLYMEQEQLV 596
            AS  QLQSP+       MN      YP  SSPVR     G ++S A+AAAV+++RS+AFAKRS SF                   A + SN++DWGSP+GKL+WG+QR++LNKLR+SASFGI  N      +  S PA   +DEPDVSWV SLV+++   R      E     +N   S     LP+W EQ+Y++ EQ +
Sbjct:  431 ASVMQLQSPS---RHSQMNH-----YP--SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNN----NNSVSRPARDYSDEPDVSWVNSLVKENAPERVN----ERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of BQ623377 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.195e-26
Identity = 82/190 (43.16%), Postives = 107/190 (56.32%), Query Frame = 3
Query:   39 TGIQMRQNM-NQQLRSSYPASSSPVRPSQSFGIDTSGAIAAAVLSSRSAAFAK-RSQSFIERNT-VSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSPSIRAGQFGFEEQQCHLNSGGSEMLPAWVEQLYMEQEQLVA 599
            +G+Q+R+++ N QL S+   SSSPV  +  F +D+S     AVL+SR+A FAK RSQSFIERN  ++ H   SS  +T       L DWGS DGKLDW VQ ++L KLRKS SF +R+ G         T    +EPDVSWV+ LV++    R                   + P W+EQ YME EQ VA
Sbjct:  451 SGLQIRRSVINPQLHSN-SLSSSPVGANSLFSMDSS-----AVLASRAAEFAKQRSQSFIERNNGLNHHPAISSMTTTC------LNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGT--GLEEPDVSWVEPLVKEPQETR-------------------LAPVWMEQSYMETEQTVA 607          
BLAST of BQ623377 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.058e-25
Identity = 67/129 (51.94%), Postives = 84/129 (65.12%), Query Frame = 3
Query:   90 PASSSPVRPSQSFGIDTSGAIAAAVLSSRSAAFAKRSQSFIERN-TVSRHSGFSSPDSTAAVMPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRD 473
            P S      + +FG+D S  +A A++SSR++AFAKRSQSFI+R           SP +T A  PS L+DWGSPDGKLDWGVQ ++L+KLRKSASF  R      +    +T A A EPDVSWV SLV+D
Sbjct:  462 PTSPMVGGANTAFGLDHS--MAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGA--PSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQ----SAMPVATHAAAAEPDVSWVNSLVKD 582          
BLAST of BQ623377 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 55/149 (36.91%), Postives = 79/149 (53.02%), Query Frame = 3
Query:   66 NQQLRSSYPASSSPVRPSQSFGIDTSGAIAAAVLSSRS-------AAFAKRS-QSFIERNTVSRHSGFSSPDSTAAV---MPSNLADWGSPDGKLDWGVQREDLNKLRKSASFGIRSNGGSVATSETSTPATADEPDVSWVQSLVRDSP 479
            NQQL    P+ SS ++ S   GI + G ++   + S S       AA A+R  Q    R+  SR  G S+  ++  V   + S+ + WGSP G  DWGV  E+L KLR+S+SF +RS G              D+PD+SWV +LV++SP
Sbjct:  573 NQQL----PSHSSLLQAS--LGISSPGRMSPRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGPSAARASGVVGSPLSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG--------------DDPDLSWVHTLVKESP 701          
The following BLAST results are available for this feature:
BLAST of BQ623377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H47_ARATH7.388e-3143.81Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H29_ARATH3.667e-3043.00Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H66_ARATH4.195e-2643.16Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H33_ORYSJ6.058e-2551.94Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H24_ORYSJ1.185e-1236.91Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00468 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00468 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623377 ID=BQ623377; Name=BQ623377; organism=Citrus sinensis; type=EST; length=614bp
CCTCATTGGATGCATCGGCATCCCAGTTGCAGAGTCCTACAGGCATCCAA
ATGCGACAGAACATGAACCAGCAGCTTCGCTCTAGCTACCCTGCATCTTC
CTCTCCTGTGAGACCATCTCAATCCTTTGGGATTGATACCTCTGGGGCCA
TTGCAGCTGCAGTTTTGAGTTCTAGATCAGCTGCCTTTGCAAAGCGGAGT
CAGAGCTTCATCGAGCGAAATACTGTCAGTCGTCATTCTGGGTTTTCTTC
ACCAGATTCAACAGCTGCTGTAATGCCCTCTAACCTGGCTGATTGGGGTT
CCCCTGATGGTAAGTTGGACTGGGGCGTCCAGCGAGAGGATCTGAACAAG
CTGCGGAAATCTGCATCTTTTGGTATTAGAAGCAATGGTGGCAGTGTGGC
AACATCTGAAACCTCAACACCAGCAACTGCGGATGAGCCTGATGTGTCTT
GGGTTCAGTCCCTGGTCAGGGACAGCCCATCCATAAGGGCTGGTCAATTT
GGCTTTGAGGAGCAGCAGTGTCATCTTAACTCTGGGGGTTCAGAGATGCT
TCCAGCTTGGGTGGAGCAATTGTACATGGAGCAGGAGCAGTTGGTGGCCT
AGTACCAAACTTAG
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