BQ623380

Overview
NameBQ623380
Unique NameBQ623380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:556..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.385e-25
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 3
Query:    3 FSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            FSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNN
Sbjct:  177 FSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.821e-24
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 FSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            +SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNN
Sbjct:  178 YSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   51 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 104          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  201 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QALVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB121_HORVU1.385e-2592.86Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC5.821e-2491.07Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2D_SOLLC1.942e-1161.82Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.942e-1161.82Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.942e-1161.82Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC1.942e-1161.82Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB25_NICPL1.942e-1161.82Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC1.942e-1161.82Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_PETSP1.942e-1161.82Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_NICPL1.942e-1161.82Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00471 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00471 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623380 ID=BQ623380; Name=BQ623380; organism=Citrus sinensis; type=EST; length=375bp
GCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATA
AAAAATGGGCGTTTGGCATTGCTGGCATTTGTGGGTTTCTGCGTGCAACA
ATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGG
CTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATT
GTGCCTTGAAGAATTGCATTGTTAAATTATCCAATCCACTGTAAAATTCC
CTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAA
GATTAGAAAGTAATTGTCCTCCAATGACGTTCATGCTAGAATCTAATACT
ATTGTGATTGCCATAATCAAGAGCT
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