BQ623381

Overview
NameBQ623381
Unique NameBQ623381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:135..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 9.251e-105
Identity = 173/186 (93.01%), Postives = 182/186 (97.85%), Query Frame = 2
Query:   17 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 574
            MTKQ   WSPYDNNGGTCVA+AGADYCV AADTRMSTGY+IL+RDYSKIIKLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVK
Sbjct:    1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVK 186          

HSP 2 Score: 38.891 bits (89), Expect = 9.251e-105
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  571 QTWFASATERDIYTGNKLEIGVLTKMG 651
            +T FASATERDIYTG++LEI +L   G
Sbjct:  186 KTCFASATERDIYTGDRLEIVILNASG 212          

HSP 3 Score: 24.2534 bits (51), Expect = 9.251e-105
Identity = 11/15 (73.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  639 NKDGIYREYMELRKD 683
            N  GI RE MELRKD
Sbjct:  209 NASGIRREEMELRKD 223          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 4.165e-98
Identity = 164/186 (88.17%), Postives = 175/186 (94.09%), Query Frame = 2
Query:   17 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 574
            MTKQH  WSPYDNNGGTCVAIAG+DYCV AADTRMSTGYSILSRDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCPAM QLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVK
Sbjct:    1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVK 186          

HSP 2 Score: 38.5058 bits (88), Expect = 4.165e-98
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  571 QTWFASATERDIYTGNKLEIGVLTKMG 651
            +T FASATERDIYTG+KLEI +L   G
Sbjct:  186 KTVFASATERDIYTGDKLEIMILKADG 212          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 2.214e-90
Identity = 147/176 (83.52%), Postives = 163/176 (92.61%), Query Frame = 2
Query:   47 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 574
            Y+NNGGTCVAIAGADYCV AADTR+S GY+IL+RD+SKI +LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCPAM QLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK
Sbjct:    9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVK 184          

HSP 2 Score: 40.4318 bits (93), Expect = 2.214e-90
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            FASATERDIYTG+KLEI V+ K G
Sbjct:  187 FASATERDIYTGDKLEIVVINKAG 210          

HSP 3 Score: 24.6386 bits (52), Expect = 2.214e-90
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  639 NKDGIYREYMELRKD 683
            NK G  REY++LRKD
Sbjct:  207 NKAGTKREYIDLRKD 221          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.528e-49
Identity = 91/156 (58.33%), Postives = 118/156 (75.64%), Query Frame = 2
Query:   29 HPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            H  +  Y +NGGT +A+AG DYCV A DTRMS G Y I +R Y+KI +L  KCV+A+SG QAD  ALQK L +    ++ +H K MS PA+ Q LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+
Sbjct:   20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQV 175          

HSP 2 Score: 26.5646 bits (57), Expect = 2.528e-49
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  586 SATERDIYTGNKLEIGVLTKMG 651
            SA ERDIYTG+  +I V+ K G
Sbjct:  204 SAGERDIYTGDFADIVVVDKNG 225          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.568e-45
Identity = 85/179 (47.49%), Postives = 116/179 (64.80%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 574
            +SPY  NGGT +A+AG D+ + A+DTR+S GYSI SRD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK
Sbjct:   26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVK 200          

HSP 2 Score: 33.4982 bits (75), Expect = 4.568e-45
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SA ERD+YTG+ L+I ++TK G
Sbjct:  203 FISAAERDVYTGDALKICIITKEG 226          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.568e-45
Identity = 85/179 (47.49%), Postives = 116/179 (64.80%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVK 574
            +SPY  NGGT +A+AG D+ + A+DTR+S GYSI SRD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK
Sbjct:   27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVK 201          

HSP 2 Score: 33.4982 bits (75), Expect = 4.568e-45
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SA ERD+YTG+ L+I ++TK G
Sbjct:  204 FISAAERDVYTGDALKICIITKEG 227          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.408e-44
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 180          

HSP 2 Score: 32.7278 bits (73), Expect = 8.408e-44
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SA ERD+YTG+ L I ++TK G
Sbjct:  206 FISAAERDVYTGDALRICIVTKEG 229          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 8.408e-44
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+
Sbjct:   30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 181          

HSP 2 Score: 32.7278 bits (73), Expect = 8.408e-44
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SA ERD+YTG+ L I ++TK G
Sbjct:  207 FISAAERDVYTGDALRICIVTKEG 230          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.408e-44
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+
Sbjct:   30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 181          

HSP 2 Score: 32.7278 bits (73), Expect = 8.408e-44
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SA ERD+YTG+ L++ ++TK G
Sbjct:  207 FISAAERDVYTGDALKVCIVTKEG 230          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.161e-43
Identity = 76/156 (48.72%), Postives = 108/156 (69.23%), Query Frame = 2
Query:   26 QHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            +HP +SPY++NGG+ VAIAG D+ V AADTR+S+GY+I SR  SK+ KL+ + V+ S+G  AD  +L   +  R   Y+H H + M+  A+ Q+LS  +Y +RFFPYY  N+L G+DNEGKG VY+YD +G  E+  Y + G+  TL+ P LDNQ+
Sbjct:   18 KHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQI 173          

HSP 2 Score: 34.6538 bits (78), Expect = 3.161e-43
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMGFIVNT 666
            F SA ERDIYTG+ + I ++TK G  V T
Sbjct:  201 FISAAERDIYTGDSVLINIITKDGIEVRT 229          
The following BLAST results are available for this feature:
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSB1_PETHY9.251e-10593.01Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH4.165e-9888.17Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ2.214e-9083.52Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI2.528e-4958.33Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU4.568e-4547.49Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU4.568e-4547.49Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_MOUSE8.408e-4450.66Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_HUMAN8.408e-4450.66Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN8.408e-4450.66Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_DROME3.161e-4348.72Proteasome subunit beta type-1 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00472 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00472 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623381 ID=BQ623381; Name=BQ623381; organism=Citrus sinensis; type=EST; length=689bp
TTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCATACG
ACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTGTGTA
ACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCCGCGA
TTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTG
GTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAGGCAT
TTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAATGGG
CCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTACTATT
CATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGTCTAC
ACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAGGG
TTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAGTCTC
CCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAG
GCTGAAGCAGTTGATTTGGTCAAACTTGGTTTGCATCAGCAACTGAGAGG
GACATATACACGGGAAACAAACTTGAAATTGGTGTCCTAACAAAGATGGG
ATTTATCGTGAATACATGGAACTGAGGAAGGATTAATCT
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