BQ623383

Overview
NameBQ623383
Unique NameBQ623383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:314..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623383 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 2.904e-96
Identity = 171/199 (85.93%), Postives = 188/199 (94.47%), Query Frame = 3 
Query:  102 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKKRGIRELLVGKDDELLQTETSTIA 698
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAG KQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK  GIRELLVGKDDELL+TET TIA
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIA 276
[Close]
BLAST of BQ623383 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.445e-87
Identity = 157/198 (79.29%), Postives = 175/198 (88.38%), Query Frame = 3 
Query:  102 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKKRGIRELLVGKDDELLQTETSTI 695
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AG K IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DK+ G+RELLVGKDDELLQT+T T+
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTV 203
The following BLAST results are available for this feature:
BLAST of BQ623383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH2.904e-9685.93Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH1.445e-8779.29Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00474 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00474 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623383 ID=BQ623383; Name=BQ623383; organism=Citrus sinensis; type=EST; length=698bp
CTCTTCTCCTTCTTCACTAACATCACTTCCGAGAACGAGATACCCGAAGG
AGTTGCGTCAGTAAAACCGAAGCAGTCAAAGTTTTATCGATGGCTAAGAG
TACCGTTCTTGTCACCGGCGCTGGTGGTCGAACCGGTCAAATAGTTTATA
AGAAATTAAAGGAGAGGTCAGAGCAATATGCTGCTAGAGGTTTGGTCAGA
ACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCTGATGATCTTTTTATTGG
TGACATAAGGGACTCTAATAGCATCATTCCTGCAATCCAAGGAATCGATG
CTCTCATAATTCTCACAAGTGCAGTACCAAAGATGAAACCTGATTTTGAT
CCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGAAGAGGGTGCATATCC
TGAACAGGTTGATTGGATTGGTCAGAAAAATCAAATTGATGCTGCTAAGG
CTGCTGGAGCGAAGCAAATTGTGTTGGTTGGATCGATGGGAGGAACAAAT
CTTAATCATCCCTTGAACAGTTTGGGCAATGGCAATATATTGGTTTGGAA
AAGAAAGGCTGAGCAGTATTTGGCTGACTCTGGTATTCCATACACAATTA
TAAGGGCCGGAGGCCTTCAGGATAAAAAAAGGGGTATCCGAGAATTACTT
GTCGGTAAGGATGATGAACTTCTTCAGACAGAAACAAGCACAATTGCC
back to top