BQ623384

Overview
NameBQ623384
Unique NameBQ623384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623384 vs. ExPASy Swiss-Prot
Match: AMO_ARATH (Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.142e-71
Identity = 130/222 (58.56%), Postives = 164/222 (73.87%), Query Frame = 1
Query:    1 VFPAADGRPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDID-DSDNSFVKVNIKRQETSPGESPRRSYLKAVRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRXXXXXXXXXXXXXTAASLLDRENPPQSR 663
            VF + DG+P V+ NMIC+FE YAGDI WRH+E       I+E RPKVTLV RMA SV NYDYI DWEFQTDGLIR+ V  SG+LMVKGT Y+N++ + ++ ++  G L+SENVIGV+HDHFITF+LDMDID   +NS VKV++++Q    G+SPR+SYLK  + +AKTEKDAQIKL LYDP EFH++NP +K+R              AASLLD ++PPQ R
Sbjct:  383 VFASPDGKPIVQPNMICLFERYAGDISWRHSEILFANADIRESRPKVTLVARMATSVGNYDYIFDWEFQTDGLIRVTVAASGMLMVKGTPYDNVDDLGDREDDA-GPLISENVIGVVHDHFITFHLDMDIDGPMNNSLVKVHLEKQRVPTGKSPRKSYLKVKKYIAKTEKDAQIKLSLYDPYEFHIVNPNRKSRVGNPAGYRIVPGGNAASLLDHDDPPQIR 603          
BLAST of BQ623384 vs. ExPASy Swiss-Prot
Match: AMO_PEA (Primary amine oxidase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 92/218 (42.20%), Postives = 125/218 (57.34%), Query Frame = 1
Query:   10 AADGRPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDDSDNSFVKVNIKRQETSPGESPRRSYLKAVRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRXXXXXXXXXXXXXTAASLLDRENPPQSR 663
            +A+G P +  N IC+FE Y G+I WRH E+ I    I+E R +V L+VR   +V NYD ++DWEF+  G I+  + LSGIL +KGT  ++ ++I    E+L G L+S N IG+ HDHF  +YLD DID + NSF K ++K      G S R+SY       AKTE DA+I + L  PAE  V+NP  KT               A  LL  ++ PQ R
Sbjct:  357 SANGTPILLKNAICVFEQY-GNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNYDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIK---EDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGL-APAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIR 569          
BLAST of BQ623384 vs. ExPASy Swiss-Prot
Match: AMO_LENCU (Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.520e-40
Identity = 91/218 (41.74%), Postives = 123/218 (56.42%), Query Frame = 1
Query:   10 AADGRPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDDSDNSFVKVNIKRQETSPGESPRRSYLKAVRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRXXXXXXXXXXXXXTAASLLDRENPPQSR 663
            +ADG P    N IC+FE Y G+I WRH E+ I    I+E R +V L +R   +V NYD ++DWEF+T G ++  + LSGIL +KGT  ++ ++I    E + G L+S N IG+ HDHF  +YLD DID + NSF K ++K      G S R+SY       AKTE DA+I + L  PAE  V+NP  KT               A  LL  ++ PQ R
Sbjct:  350 SADGTPIFLENAICVFEQY-GNIMWRHTETGIPNESIEESRTEVDLAIRTVVTVGNYDNVLDWEFKTSGWMKPSIALSGILEIKGTNIKHKDEIK---EEIHGKLVSANSIGIYHDHFYIYYLDFDIDGTQNSFEKTSLKTVRIVDGGSKRKSYWTTETQTAKTESDAKITIGL-APAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIR 562          
BLAST of BQ623384 vs. ExPASy Swiss-Prot
Match: AMO_KLEAE (Primary amine oxidase OS=Klebsiella aerogenes GN=maoA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.190e-21
Identity = 62/186 (33.33%), Postives = 97/186 (52.15%), Query Frame = 1
Query:   19 GRPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDDSDNSFVKVNIKRQETSPGESPRRSYLKAVRNVAKTEKDAQIKLKLYDPAEFHVINPTKK 573
            G+P      + IFE YAG   ++H E     MG   V   +  LVVR  ++V NYDYI DW F  +G I I  G +GI  VKG   + M+  S + +  +GTL+  N++G  H H   F LD+D+D  +N+ V ++ + +  + G  PR S ++  +    +E+ A  K   +DP    +++ T K
Sbjct:  448 GKPTTIPGAVAIFERYAGP-EYKHLE-----MGKPNVSTERRELVVRWISTVGNYDYIFDWVFHDNGTIGIDAGATGIEAVKGVLAKTMHDPSAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNTLVAMDPEVKPNTAG-GPRTSTMQVNQYTIDSEQKAAQK---FDPGTIRLLSNTSK 623          
BLAST of BQ623384 vs. ExPASy Swiss-Prot
Match: AMO_ECOLI (Primary amine oxidase OS=Escherichia coli (strain K12) GN=tynA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 66/190 (34.74%), Postives = 99/190 (52.11%), Query Frame = 1
Query:   19 GRPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDDSDNSFVKVN-IKRQETSPGESPRRSYLKAVRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTR 579
            G P      I +FE YAG   ++H E     MG   V   +  LVVR  ++V NYDYI DW F  +G I I  G +GI  VKG   + M+  + + +  +GTL+  N++G  H H   F LD+D+D  +NS V ++ + +  T+ G  PR S ++  +     E+DA  K   +DP    ++ NP K+ R
Sbjct:  448 GVPMEIPRAIAVFERYAGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGG--PRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENR 626          
The following BLAST results are available for this feature:
BLAST of BQ623384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AMO_ARATH7.142e-7158.56Primary amine oxidase OS=Arabidopsis thaliana GN=A... [more]
AMO_PEA1.006e-4042.20Primary amine oxidase OS=Pisum sativum PE=1 SV=1[more]
AMO_LENCU6.520e-4041.74Primary amine oxidase (Fragment) OS=Lens culinaris... [more]
AMO_KLEAE5.190e-2133.33Primary amine oxidase OS=Klebsiella aerogenes GN=m... [more]
AMO_ECOLI1.972e-2034.74Primary amine oxidase OS=Escherichia coli (strain ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00475 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00475 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623384 ID=BQ623384; Name=BQ623384; organism=Citrus sinensis; type=EST; length=693bp
GTGTTTCCAGCTGCTGATGGAAGGCCGTACGTTCGATCAAACATGATTTG
CATATTTGAGAGCTATGCCGGTGATATTGGGTGGCGCCACGCAGAGAGTC
CGATTACGGGTATGGGGATTAAAGAAGTAAGGCCAAAGGTGACGTTAGTG
GTTAGAATGGCAGCATCCGTTGCCAATTATGATTATATTGTTGATTGGGA
GTTTCAAACAGACGGACTAATCAGAATTAAGGTTGGACTAAGTGGGATTC
TGATGGTGAAAGGCACAGCCTATGAGAATATGAACCAAATTTCCAACCAA
GCTGAAAATCTATTTGGCACCCTTTTGTCCGAAAATGTTATCGGTGTAAT
CCATGACCACTTTATCACATTCTACCTCGATATGGACATAGATGACTCTG
ATAATTCCTTCGTGAAGGTAAATATTAAGAGGCAGGAAACCTCACCTGGA
GAGTCACCAAGGAGGAGTTACTTGAAAGCTGTTAGAAATGTGGCTAAAAC
GGAGAAAGATGCACAAATTAAGCTTAAACTCTACGACCCAGCTGAATTCC
ATGTGATCAATCCGACTAAGAAGACACGGGTGGGGAACCCGGGTGGGTAC
AAGGTGGGTCCTGGTGGCACTGCTGCTAGCTTGCTTGATCGTGAAAATCC
ACCTCAAAGCCGGGCGCATTTACTAATATCAGATATGGGTACC
back to top