BQ623393

Overview
NameBQ623393
Unique NameBQ623393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4383 contig Csv1_Contig4383:8..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623393 vs. ExPASy Swiss-Prot
Match: DNJ10_ARATH (Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.756e-17
Identity = 55/128 (42.97%), Postives = 67/128 (52.34%), Query Frame = 3 
Query:    3 VADIEATLSRVCQMVLQDNNXXXXXXXXXXXXXXTLGKIFQRAKSNNGSEGETVLSGGVHKLNGSDSCYDASSPITSPKSTEHQEXXXXXXXXXXPYVEAPNLSDAQFGRDFPIPTAPPGAQGHSSTG 386
            VADIEATL RVCQ+VLQD                 LG+IFQRAK+   SE + + +    KLNG+   +D  +  TSPKS+E             PYVE   L D QF   FP P  PPGA  +SS+G
Sbjct:  272 VADIEATLCRVCQLVLQDPEAKREELRTRARGLKALGRIFQRAKT--ASESDPLENSEPQKLNGNGKNHDEDTS-TSPKSSEASHSTSGPQEPQSPYVEEFKLGDEQFNYYFPRPAPPPGAGKYSSSG 396
The following BLAST results are available for this feature:
BLAST of BQ623393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ10_ARATH7.756e-1742.97Chaperone protein dnaJ 10 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00484 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00484 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623393 ID=BQ623393; Name=BQ623393; organism=Citrus sinensis; type=EST; length=697bp
ATGTAGCTGACATTGAAGCCACACTTTCCCGAGTTTGTCAGATGGTTCTT
CAAGATAACAATGCCAAGAAAGAAGAGCTTCGTGCGCGAGCAAAAGCATT
GAAAACCCTCGGCAAAATCTTCCAGAGAGCCAAGTCAAACAATGGGAGTG
AGGGTGAAACTGTGCTAAGTGGTGGAGTGCATAAACTGAATGGAAGTGAT
TCATGCTATGATGCTTCTTCTCCCATTACATCGCCAAAATCTACAGAGCA
TCAAGAATCATCCCAGTCTGCTTTTGCATCTCAGAGCCCATATGTGGAAG
CCCCCAACTTGTCAGATGCTCAGTTTGGTCGTGACTTCCCAATACCAACA
GCACCACCTGGTGCTCAAGGACATTCTTCGACAGGCAAGGAATAAAGATG
AAGAATTTGATCGATTGAGCCATGTTTGTCAAATATATCTATGATGTGTA
TGATGTTATGGATGCAGTAGGGAAAGCACTCAAGCTTGCATTTGTTGGAT
AAGTCTGTACCAGTAGACGATGTTGGAAGCACAACCCACTTCTAAGTGAT
AGGATTAGCGTATTTTATTCAATCTGTGGGTCATGCATATACATAAAATG
GAAGGGATTGCAGAAGATAGTTCTTTCTATTGATTCAAAATAGGCTTCCA
TTGGCTGCCTACTCATCATTTGAATTGAGTAATGGATTCCATTGCAT
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