BQ623399

Overview
NameBQ623399
Unique NameBQ623399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:98..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.164e-66
Identity = 120/135 (88.89%), Postives = 131/135 (97.04%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAVHDDCKLKFLELKAKRTYRFI++KIEEKQK+V+VEKLGEPT++YEDF A LPA+ECRYAVYD+DF+T EN QKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EMGLDVF+
Sbjct:    1 MANAASGMAVHDDCKLKFLELKAKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFR 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.277e-66
Identity = 120/135 (88.89%), Postives = 130/135 (96.30%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+GEPT++YEDFAASLP  ECRYAVYD+DFVTAENCQKSRIFFIAW PDTARVRSKMIYASSKDRFKRELDGIQVELQA DP+EMGLDV +
Sbjct:    1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQ 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 7.854e-65
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQVIVEK+GEP  TYEDFAASLPA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDV K
Sbjct:    1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.285e-64
Identity = 116/135 (85.93%), Postives = 130/135 (96.30%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+G+P QTYE+FAA LPA+ECRYA+YD+DFVTAENCQKS+IFFIAW PD A+VRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVF+
Sbjct:    1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFR 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 7.351e-63
Identity = 116/135 (85.93%), Postives = 129/135 (95.56%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAVHDDCKLKF+ELKAKRT+R IV+KIE+KQ  VIVEKLGEP Q+Y+DFAASLPA++CRY +YD+DFVTAENCQKS+IFFIAWSPDTA+VR KMIYASSKDRFKRELDGIQVELQATDP+EMGLDVFK
Sbjct:    1 MANAASGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQ--VIVEKLGEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFK 133          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 3.648e-62
Identity = 112/135 (82.96%), Postives = 127/135 (94.07%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAV D+CKLKFLELKAKRTYRFI++KI+EK+K V+VEK+GEP   Y+DFAASLPA ECRYA++DYDFVT ENCQKS+IFFIAWSPDT+RVRSKMIYASSKDRFKRELDGIQVELQATDP+E+GLDV +
Sbjct:    1 MANAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIR 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.365e-61
Identity = 112/135 (82.96%), Postives = 127/135 (94.07%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MANAASGMAVHDDCKLKF+ELK KRT+RFI++KIEE QKQVIVEK+GEP QT+ED AASLPA+ECRYA++D+DFV++E   +SRIFF+AWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVFK
Sbjct:    1 MANAASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 108/135 (80.00%), Postives = 122/135 (90.37%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN+ASGM V D+CKLKFLELKAKR YRFIVFKI+EK +QV+++KLG P +TYEDF  S+P +ECRYAVYDYDF T ENCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K
Sbjct:    1 MANSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.435e-58
Identity = 104/135 (77.04%), Postives = 124/135 (91.85%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            MAN+ASGM V+D+CK+KFLELKAKRTYRFIVFKI+EK +QV +EKLG P +TY+DF +S+P +ECRYAVYD+DF T +NCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRE++GIQVELQATDPSEM LD+ K
Sbjct:    1 MANSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIK 135          
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 9.299e-58
Identity = 103/135 (76.30%), Postives = 126/135 (93.33%), Query Frame = 3
Query:  108 MANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFK 512
            M+N+ASGMAV D+CKLKFLELKAKR++RFIVFKI EK +QV+V++LG+P ++Y+DF A LPA+ECRYAV+D+DFVT ENCQKS+IFFI+W+PDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K
Sbjct:    1 MSNSASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVK 135          
The following BLAST results are available for this feature:
BLAST of BQ623399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADF2_PETHY4.164e-6688.89Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_PETHY9.277e-6688.89Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF4_ARATH7.854e-6588.15Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ARATH2.285e-6485.93Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF2_ARATH7.351e-6385.93Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF7_ORYSJ3.648e-6282.96Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF3_ARATH2.365e-6182.96Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF10_ARATH7.607e-6080.00Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF8_ARATH1.435e-5877.04Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_ORYSJ9.299e-5876.30Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00490 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00490 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623399 ID=BQ623399; Name=BQ623399; organism=Citrus sinensis; type=EST; length=613bp
GAAGAGAGTCCTTCATTATCTTAACCTCCATTTCCTCTCCAACAAACTTT
CCTTCACCTTGCAAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCT
AGAAACCATGGCTAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTA
AGCTAAAGTTCTTGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTA
TTTAAGATTGAGGAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGA
GCCAACTCAAACCTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGT
GCCGATATGCTGTGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAA
AAAAGCAGGATTTTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAG
AAGCAAGATGATTTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAG
ATGGCATTCAAGTGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTT
GACGTATTTAAAAGACCGTGCCCACTAAATAAAGGCTTCTGATCTCAGCA
ATTGAGATTGGTTTTATCTTTGTGCTTTACCTAAGGGGAAATGGTAATAG
TTTGTGGCGGCAG
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