BQ623409

Overview
NameBQ623409
Unique NameBQ623409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623409 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:  488 PHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNA 679
            P++ +  + A F  HYA+P++ GLL+    PQA   +PQM+ M P RVPLP EL E +P++VNA
Sbjct:  122 PNIHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNA 185
The following BLAST results are available for this feature:
BLAST of BQ623409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NFYA3_ARATH3.823e-1146.88Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00500 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00500 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623409 ID=BQ623409; Name=BQ623409; organism=Citrus sinensis; type=EST; length=705bp
GGTGGCAGTTCCTCGGCAACAATTTGCTAACACTAAACAATTGAGCTTTC
AATTTCAAGACCAGGAATCATCCTCAACTCAGTCAACTGGTCAATCTTGC
TCCAAAGAGGCTTGTGTCAAAGATGACAACCCTAGCAGGCAAAGCGTAGT
ATCAGCACCACCAGGTGATTACATGAATCCCAAGTGTTCCTTATTTTGGT
GCTCTTGTTCTTTTTTCATTATCAAATAGTTGTGCTTAGTTAGTGCATAA
GGCTTTTAATGATGTTATTGGGATATAATAATTATTTTTCTAGTTTTGTA
TATTTTGTGTCATTATTGGGGTCGCCTCCTGAGTCCCAATTAAATTGCTT
ACGAGTTAATGGGGAAACATGTACTGGGCTAAACCTGGCAATGACAAAGA
GGATTTAATGGAATTCACGTGAAGCCTGTCGGAGGTCACTCTAAACTAGC
CTCATCAATGGGTCCTCATGATTTTGTCTTCACTCCTCCACATGTTGATT
ACAACCAGTCAGTTGCTCCATTTCAACTCCATTATGCTGAACCATACTTC
AGTGGCTTATTATCACCATTCCTTCCCCCGCAGGCTATGATTCATCATCC
CCAAATGATGGGGATGGCTCCTGCTCGAGTGCCGCTGCCTCTTGAACTTG
CTGAAGATGAGCCCATTTACGTCAATGCTAACAATATCGAGCGATTCTCA
GGCGC
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