BQ623416

Overview
NameBQ623416
Unique NameBQ623416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623416_ssr78 microsatellite BQ623416_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:69..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 7.475e-47
Identity = 95/155 (61.29%), Postives = 114/155 (73.55%), Query Frame = 1
Query:   58 HPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVTRNSKVSG-PITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            H Q   P  SGIV  + +V     S F G  V +PR + S  T    +    ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P  I AK+IMRSP+EWDRFMR M
Sbjct:   15 HSQRNVPR-SGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFM 168          

HSP 2 Score: 29.6462 bits (65), Expect = 7.475e-47
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2
Query:  515 ERYANQNGLQFVKK 556
            ERY++QNGLQFVKK
Sbjct:  169 ERYSDQNGLQFVKK 182          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.270e-46
Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  115 SAQSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            S  S F G S+   R + + + R+      + MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMR M
Sbjct:   34 SLHSSFGGVSLQCRRTKPASLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFM 166          

HSP 2 Score: 26.9498 bits (58), Expect = 1.270e-46
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  515 ERYANQNGLQFVKK 556
            ERY+  NGLQFVKK
Sbjct:  167 ERYSQANGLQFVKK 180          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.931e-27
Identity = 59/125 (47.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  139 QSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            +S +    R S   R S V   +      +IQF++G +E  VP+V+LT+S+DGSNG A F FS+P VF++    GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++  +W+RFMR M
Sbjct:   14 RSFNASTKRFSKSARRSVV---VRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFM 133          

HSP 2 Score: 23.483 bits (49), Expect = 1.931e-27
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  515 ERYANQNGLQFVKK 556
            ERYA  NGL F KK
Sbjct:  134 ERYAEDNGLGFSKK 147          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFI+G DE  +PDV+LT+SRDGS G A F F  P++ D S+ + G+ITG Y+ID+EGTL++ DV+A+F+NG+P  IE+ YIM+SP  WDRFMR M
Sbjct:    5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFM 100          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PHATR (Photosystem II reaction center psb28 protein OS=Phaeodactylum tricornutum GN=psb28 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFI+G DE  +PDV+LT+S+DGS G A F F  P++ D ++ + G+ITG Y+IDEEG L++ DV+A+FVNG+P  IE+ YIM+SP  WDRFMR M
Sbjct:    5 IQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFM 100          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.711e-26
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFIQG +E  +PDV+LT+SRDGS G A F F+ P V ++   + G+ITG Y+IDEEG L + DV+A+FVNG+P  IEA YIM+S  +WDRFMR M
Sbjct:    4 IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFM 99          

HSP 2 Score: 21.9422 bits (45), Expect = 4.711e-26
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERY+  NGL F K
Sbjct:  100 ERYSEDNGLSFTK 112          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PORYE (Photosystem II reaction center psb28 protein OS=Porphyra yezoensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.711e-26
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            TIQFIQG +E  VPDV+LT+SRDGS G A F F+ P + D+S  + G+ITG Y++D EG + + DV+AKF+NG+P  IEA ++++SP +WDRFMR M
Sbjct:    3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFM 99          

HSP 2 Score: 22.7126 bits (47), Expect = 4.711e-26
Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERYA  NGL F K
Sbjct:  100 ERYAQDNGLTFTK 112          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PORPU (Photosystem II reaction center psb28 protein OS=Porphyra purpurea GN=psb28 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.711e-26
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1
Query:  226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            TIQFIQG +E  VPDV+LT+SRDGS G A F F+ P + D+S  + G+ITG Y++D EG + + DV+AKF+NG+P  IEA ++++SP +WDRFMR M
Sbjct:    3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFM 99          

HSP 2 Score: 22.7126 bits (47), Expect = 4.711e-26
Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERYA  NGL F K
Sbjct:  100 ERYAQDNGLTFTK 112          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_THAPS (Photosystem II reaction center psb28 protein OS=Thalassiosira pseudonana GN=psb28 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.762e-25
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFI+G DE  +PDV+LT+SRDGS G A F F   ++ + S  + G+ITG YMIDEEG L++ DVSA+FVNG+P  +E+ YIM+SP  WDRFMR M
Sbjct:    5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFM 100          

HSP 2 Score: 21.1718 bits (43), Expect = 1.762e-25
Identity = 8/13 (61.54%), Postives = 8/13 (61.54%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            ERY   NGL F K
Sbjct:  101 ERYGESNGLAFTK 113          
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_GRATL (Photosystem II reaction center psb28 protein OS=Gracilaria tenuistipitata var. liui GN=psb28 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.293e-25
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513
            IQFI+G +E  V DV LT+SRDGS G A F F+ P +  S  E  GDITG Y+ D+EG L + DVSAKF+NG+P  +EA YI++SP+EWDRFMR M
Sbjct:    4 IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFM 99          

HSP 2 Score: 21.9422 bits (45), Expect = 2.293e-25
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  515 ERYANQNGLQFVK 553
            E+YAN+N L F K
Sbjct:  100 EKYANENKLSFTK 112          
The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_ARATH7.475e-4761.29Photosystem II reaction center PSB28 protein, chlo... [more]
PSB28_ORYSJ1.270e-4665.41Photosystem II reaction center PSB28 protein, chlo... [more]
PSB28_OSTTA1.931e-2747.20Photosystem II reaction center psb28 protein, chlo... [more]
PSB28_ODOSI4.888e-2758.33Photosystem II reaction center psb28 protein OS=Od... [more]
PSB28_PHATR3.168e-2657.29Photosystem II reaction center psb28 protein OS=Ph... [more]
PSB28_GUITH4.711e-2658.33Photosystem II reaction center psb28 protein OS=Gu... [more]
PSB28_PORYE4.711e-2655.67Photosystem II reaction center psb28 protein OS=Po... [more]
PSB28_PORPU4.711e-2655.67Photosystem II reaction center psb28 protein OS=Po... [more]
PSB28_THAPS1.762e-2558.33Photosystem II reaction center psb28 protein OS=Th... [more]
PSB28_GRATL2.293e-2558.33Photosystem II reaction center psb28 protein OS=Gr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00507 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00507 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bp
GGTGCAATGGCAGCTCTGCGGTCTCTTGCATTAGCCTCTCCAATCTCACA
CTGTTGGCACCCACAATCCCGCTCTCCCTCTCTCTCTGGTATTGTAACAT
GGGCTGTGCATGGAAGTGCACAATCACCATTCAACGGCCAATCTGTACAT
ATGCCTCGTATGCGTTTGTCCCCGGTAACACGAAATTCTAAGGTATCTGG
ACCCATAACGATGGCGGTGAAACCGACAATTCAGTTCATCCAAGGAACTG
ATGAATTGACAGTTCCGGATGTGAAGCTAACAAAATCAAGAGATGGTTCA
AACGGTATGGCCATATTCAGTTTTAGCGAACCCTCCGTTTTTGACTCGTC
CGGTGAAATTGGTGATATCACCGGATTTTACATGATTGATGAGGAGGGAA
CTCTTCAATCAGTTGATGTAAGTGCCAAATTTGTCAATGGGAGACCTTCT
AGGATTGAAGCAAAGTATATCATGCGGTCTCCCCGAGAGTGGGATAGGTT
TATGAGGGTCATGGGAGCGGTATGCTAATCAGAATGGCTTGCAATTTGTC
AAGAAATGAGGCATTTTTTTTCTTCTCCTTTGCTTTGCTTTACCCTATTA
CATCTTTTGGTTTTGTGTAATTTGGGCAGGCCAATGGTGAAGGCTTTGCT
TGACAGCCATTTAAGTTTGATGCAAAACCTTATGCTCTCTTCTCTTC
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