BQ623416
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 7.475e-47 Identity = 95/155 (61.29%), Postives = 114/155 (73.55%), Query Frame = 1 Query: 58 HPQSRSPSLSGIV--TWAVHGSAQSPFNGQSVHMPRMRLSPVTRNSKVSG-PITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 H Q P SGIV + +V S F G V +PR + S T + ITM VKP +QFIQGTDE+T+PDVKLT+SRDGSNGMA+FSF +PSVFDSSGE+G+ITG YMIDEEG +QS DV+A+FVNG+P I AK+IMRSP+EWDRFMR M Sbjct: 15 HSQRNVPR-SGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFM 168 HSP 2 Score: 29.6462 bits (65), Expect = 7.475e-47 Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2 Query: 515 ERYANQNGLQFVKK 556 ERY++QNGLQFVKK Sbjct: 169 ERYSDQNGLQFVKK 182
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 1.270e-46 Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = 1 Query: 115 SAQSPFNGQSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 S S F G S+ R + + + R+ + MA +P IQFIQGTDE T+PDV+LTKSRDG+NG+AIF+F +PSVFDSS E+GDITGFYMID+EG LQSVDVSAKFVNG+P+ IEAKY+MR+PREWDRFMR M Sbjct: 34 SLHSSFGGVSLQCRRTKPASLHRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFM 166 HSP 2 Score: 26.9498 bits (58), Expect = 1.270e-46 Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 2 Query: 515 ERYANQNGLQFVKK 556 ERY+ NGLQFVKK Sbjct: 167 ERYSQANGLQFVKK 180
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_OSTTA (Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.931e-27 Identity = 59/125 (47.20%), Postives = 86/125 (68.80%), Query Frame = 1 Query: 139 QSVHMPRMRLSPVTRNSKVSGPITMAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 +S + R S R S V + +IQF++G +E VP+V+LT+S+DGSNG A F FS+P VF++ GDITG ++ DEEG + +VDV+AKFVNG+P+ IEA+Y+M++ +W+RFMR M Sbjct: 14 RSFNASTKRFSKSARRSVV---VRAGTTTSIQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQ--GDITGMFLTDEEGEMSTVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFM 133 HSP 2 Score: 23.483 bits (49), Expect = 1.931e-27 Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 2 Query: 515 ERYANQNGLQFVKK 556 ERYA NGL F KK Sbjct: 134 ERYAEDNGLGFSKK 147
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27 Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 IQFI+G DE +PDV+LT+SRDGS G A F F P++ D S+ + G+ITG Y+ID+EGTL++ DV+A+F+NG+P IE+ YIM+SP WDRFMR M Sbjct: 5 IQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFM 100
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PHATR (Photosystem II reaction center psb28 protein OS=Phaeodactylum tricornutum GN=psb28 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.168e-26 Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFD-SSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 IQFI+G DE +PDV+LT+S+DGS G A F F P++ D ++ + G+ITG Y+IDEEG L++ DV+A+FVNG+P IE+ YIM+SP WDRFMR M Sbjct: 5 IQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFM 100
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.711e-26 Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 IQFIQG +E +PDV+LT+SRDGS G A F F+ P V ++ + G+ITG Y+IDEEG L + DV+A+FVNG+P IEA YIM+S +WDRFMR M Sbjct: 4 IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQLVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFM 99 HSP 2 Score: 21.9422 bits (45), Expect = 4.711e-26 Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 2 Query: 515 ERYANQNGLQFVK 553 ERY+ NGL F K Sbjct: 100 ERYSEDNGLSFTK 112
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PORYE (Photosystem II reaction center psb28 protein OS=Porphyra yezoensis GN=psb28 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.711e-26 Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1 Query: 226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG + + DV+AKF+NG+P IEA ++++SP +WDRFMR M Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFM 99 HSP 2 Score: 22.7126 bits (47), Expect = 4.711e-26 Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2 Query: 515 ERYANQNGLQFVK 553 ERYA NGL F K Sbjct: 100 ERYAQDNGLTFTK 112
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_PORPU (Photosystem II reaction center psb28 protein OS=Porphyra purpurea GN=psb28 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 4.711e-26 Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1 Query: 226 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSS-GEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 TIQFIQG +E VPDV+LT+SRDGS G A F F+ P + D+S + G+ITG Y++D EG + + DV+AKF+NG+P IEA ++++SP +WDRFMR M Sbjct: 3 TIQFIQGINEEVVPDVRLTRSRDGSTGTATFRFTNPKILDASMADKGEITGMYLMDTEGQIITRDVNAKFINGKPQAIEAVHVIKSPDDWDRFMRFM 99 HSP 2 Score: 22.7126 bits (47), Expect = 4.711e-26 Identity = 9/13 (69.23%), Postives = 9/13 (69.23%), Query Frame = 2 Query: 515 ERYANQNGLQFVK 553 ERYA NGL F K Sbjct: 100 ERYAQDNGLTFTK 112
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_THAPS (Photosystem II reaction center psb28 protein OS=Thalassiosira pseudonana GN=psb28 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.762e-25 Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 IQFI+G DE +PDV+LT+SRDGS G A F F ++ + S + G+ITG YMIDEEG L++ DVSA+FVNG+P +E+ YIM+SP WDRFMR M Sbjct: 5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGILETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFM 100 HSP 2 Score: 21.1718 bits (43), Expect = 1.762e-25 Identity = 8/13 (61.54%), Postives = 8/13 (61.54%), Query Frame = 2 Query: 515 ERYANQNGLQFVK 553 ERY NGL F K Sbjct: 101 ERYGESNGLAFTK 113
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Match: PSB28_GRATL (Photosystem II reaction center psb28 protein OS=Gracilaria tenuistipitata var. liui GN=psb28 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.293e-25 Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1 Query: 229 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEI-GDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRVM 513 IQFI+G +E V DV LT+SRDGS G A F F+ P + S E GDITG Y+ D+EG L + DVSAKF+NG+P +EA YI++SP+EWDRFMR M Sbjct: 4 IQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFM 99 HSP 2 Score: 21.9422 bits (45), Expect = 2.293e-25 Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 2 Query: 515 ERYANQNGLQFVK 553 E+YAN+N L F K Sbjct: 100 EKYANENKLSFTK 112 The following BLAST results are available for this feature:
BLAST of BQ623416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623416 ID=BQ623416; Name=BQ623416; organism=Citrus sinensis; type=EST; length=697bpback to top |