BQ623429

Overview
NameBQ623429
Unique NameBQ623429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5616 contig Csv1_Contig5616:104..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.120e-32
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 3
Query:    3 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 335
            CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V +WT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.191e-31
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 3
Query:    3 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 335
            CDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.191e-31
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 3
Query:    3 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVA-REGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 335
            CDN +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT     G+ W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  187 CDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 3.466e-31
Identity = 63/113 (55.75%), Postives = 82/113 (72.57%), Query Frame = 3
Query:    3 CDNTVKVWKLY-NGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEW 335
            CDN +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS S+DG+V IWT      + W  K+LH F   V+ VSWS+T NILAV+ G+N VTLW+E+VDG+W
Sbjct:  187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQW 297          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.902e-29
Identity = 63/117 (53.85%), Postives = 79/117 (67.52%), Query Frame = 3
Query:    3 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 353
            CDN +K++K     W +D    L+ H DWVRDVAWAPN+GLP S IAS S+D  VI+WT    G  W GK L  F   V+RVSWS+ GNILAV+ G+N VTLW+E VD EW+ ++ V
Sbjct:  185 CDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVWTQDENG-VWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHV 298          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_YARLI (Protein transport protein SEC13 OS=Yarrowia lipolytica GN=SEC13 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.103e-24
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 3
Query:    3 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQ-WEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 353
            CDN VK+WK             L  H DWVRDVAW+ ++ L KS IASAS+D  VI+WT  +EG+Q W+ K+L D   P  V++VSWSL+GN+LAV+ G+N VTLW+E + GEW     V
Sbjct:  180 CDNLVKIWKYDPSSKTYVIEETLSGHKDWVRDVAWSSSV-LSKSYIASASQDKTVIVWT--QEGNQPWKKKLLQDIPFPDVVWKVSWSLSGNVLAVSGGDNKVTLWKENLTGEWESAGVV 296          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.194e-23
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 3
Query:    3 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVL-------------HDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVT 347
            CDNTVK+W+      +     ALQ H+DWVRDVA+APN+GLP+S +A+AS+D  V+IWT       W    L             + F   V+RVSWS++GN+LAV+ G+  +TLW+E + G W  V+
Sbjct:  233 CDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNPISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVS 360          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 3
Query:    3 CDNTVKVWKLYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTVAREGDQWEGKVLHDFKTP--VYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 353
            CDN VK+W+  +         A Q H+DWVRDVAW+P+  L KS IA+AS+D  V+IWT   + ++WE + L   K P   +R SWSL+GN+LA++ G+N VTLW+E + G+W     V
Sbjct:  170 CDNLVKIWRYDDAAKTFIEEEAFQGHSDWVRDVAWSPSR-LSKSYIATASQDRTVLIWTKDGKSNKWEKQPLTKEKFPDVCWRASWSLSGNVLAISGGDNKVTLWKENIQGKWESAGEV 287          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.660e-23
Identity = 61/119 (51.26%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    6 DNTVKVWKL--YNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 353
            DN +K+W      G +K++  P L  HTDWVRDVAW+P + L KS IASASED  V IWT       QW  KVL  F   V+RVSWSL+GN+LA + G+N VTLW+E + GEW  V ++
Sbjct:  173 DNALKIWAFDAATGAYKLEREP-LTGHTDWVRDVAWSPTV-LQKSYIASASEDRTVRIWTSDPANPQQWNCKVL-GFDAAVWRVSWSLSGNVLAASGGDNKVTLWKENLKGEWECVKSI 288          
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Match: SEC13_MAGGR (Protein transport protein SEC13 OS=Magnaporthe grisea GN=SEC13 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.925e-23
Identity = 57/119 (47.90%), Postives = 76/119 (63.87%), Query Frame = 3
Query:    6 DNTVKVWKLYNGIWKMDCFPA--LQMHTDWVRDVAWAPNLGLPKSTIASASEDGKVIIWTV-AREGDQWEGKVLHDFKTPVYRVSWSLTGNILAVADGNNNVTLWEEAVDGEWRQVTAV 353
            DNT+K+W       +  C     L  HTDWV DV W+P + L KS IASAS+D  V IWT  +     W+ +VL +F T V+RVSWSL+GN+LAV+ G+N VTLW+E + GEW  V ++
Sbjct:  177 DNTLKIWSWDAASAQYRCEEGGVLSGHTDWVLDVDWSPTV-LQKSYIASASQDRTVRIWTSDSSNPGVWQSRVLKEFDTTVWRVSWSLSGNVLAVSSGDNKVTLWKENLKGEWACVNSL 294          
The following BLAST results are available for this feature:
BLAST of BQ623429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_BOVIN9.120e-3255.75Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_RAT1.191e-3155.75Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE1.191e-3155.75Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN3.466e-3155.75Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_DICDI1.902e-2953.85Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_YARLI4.103e-2450.00Protein transport protein SEC13 OS=Yarrowia lipoly... [more]
SEC13_USTMA1.194e-2342.97Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_PICPG2.660e-2345.38Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_CHAGB2.660e-2351.26Protein transport protein SEC13 OS=Chaetomium glob... [more]
SEC13_MAGGR5.925e-2347.90Protein transport protein SEC13 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00520 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00520 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623429 ID=BQ623429; Name=BQ623429; organism=Citrus sinensis; type=EST; length=553bp
GTTGTGATAATACCGTGAAGGTGTGGAAGCTGTACAATGGAATTTGGAAG
ATGGACTGCTTTCCAGCTCTTCAAATGCATACTGATTGGGTTAGAGATGT
TGCTTGGGCTCCCAACTTGGGGCTTCCAAAATCTACTATTGCAAGTGCAT
CGGAGGATGGGAAAGTTATTATATGGACTGTGGCCAGGGAAGGAGATCAA
TGGGAAGGTAAGGTGTTGCATGACTTCAAGACCCCTGTTTATAGAGTCAG
CTGGTCACTGACTGGAAACATATTGGCTGTGGCTGATGGAAACAACAATG
TAACACTGTGGGAAGAAGCAGTGGATGGGGAGTGGCGACAGGTGACTGCA
GTTGGGCCGTAAGACTCTTTTAAGTTTTTCAAATTTTTATCGTGAAATAC
AAGATTGCATTTTAGAACCTCTTTATAATTTCTTTTGAGGACCCTAAACC
GCAATCCCCACTCTTTTTATGTTACTGCATAGCTGAGCATCATTGATGGA
TATATCTGAACCCTAAATTTCTTAACTTTAGCTTCAACGAAGAATCTCCT
TTT
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