BQ623438

Overview
NameBQ623438
Unique NameBQ623438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1788 contig Csv1_Contig1788:17..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 4.999e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  123 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 356
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
The following BLAST results are available for this feature:
BLAST of BQ623438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA4.999e-37100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA4.999e-37100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE4.999e-37100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE4.999e-37100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR4.999e-37100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL4.999e-37100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ4.999e-37100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH4.999e-37100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT4.999e-37100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT4.999e-37100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00529 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00529 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623438 ID=BQ623438; Name=BQ623438; organism=Citrus sinensis; type=EST; length=475bp
GAATAAAAGAAGCATAAAATTAAAGAACTGAAAAGAGAGAAAAGGAAAGC
AGAAGAGAAATGTCAGGAAGAGGAAAGGGAGGCAAAGGATTAGGAAAGGG
AGGAGCGAAGAGGCACCGCAAGGTGCTGAGGGATAACATTCAGGGGATCA
CAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTCAAGCGTATC
AGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGA
GAACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGA
CTGTCACCGCCATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACC
CTTTACGGTTTCGGTGGTTAAATTTAGGGTTTCTTAATTTTTATGTTTTT
GAATGCTATTGAGTATCTGATGACTTTGTAATTTGTATTGATATTTGGTC
TATCAATGAAATTTTATGTTAATTG
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